Hg_chrom2_TN10mRNA_3329
Organism: Heterodera glycines Gene Locus: chr2:6389562-6391951 Feature type: polypeptideProtein Sequence
Length: 468
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.745 | 1.491 | 0.777 | 1.105 | 0.534 | 1.096 | 0.89 | 0.641 | 1.187 | 1.646 | 0.615 | 1.257 | 1.484 | 1.068 | 0.48 | 1.007 | 1.366 | 0.907 | 1.151 | 1.068 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3182
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.504
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
cytoplasm|extracellular
|
chloroplast
|
— | — | — |
38-58
|
0.980
|
1-18
|
0.991
|
0.999
|
0.000
|
0.000
|
0.197
|
0.159
|
0.185
|
0.510
|
0.374
|
0.510
|
0.300
|
0.004
|
0.217
|
0.780
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006828
|
1.000
|
1.000
|
Hsc_gene_21903.t1
|
Hsc_gene_21903.t1
|
— | — |
KAI1706107.1 lecithin:cholesterol acyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0008374
|
GO:0003674_0.730|GO:0008150_0.725|GO:0005575_0.717|GO:0110165_0.712|GO:0009987_0.661|GO:0003824_0.593|GO:0016020_0.585|GO:0016740_0.543|GO:0008152_0.537|GO:0016746_0.528|GO:0044238_0.523|GO:0016747_0.519|GO:0044237_0.512
|
IPR003386+123-374+|IPR029058+61-434_125-468+
|
— |
PF02450+123-374+Lecithin:cholesterol_acyltransferase
|
— |
PTHR11440+58-465+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
51360.050
|
5.950
|
-2.000
|
15.171
|
11.752
|
41.239
|
58.761
|
7.692
|
7.479
|
54.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1273.810
|
19.962
|
1036.798
|
1097.780
|
3126.876
|
465.998
|
720.192
|
2081.740
|
1578.593
|
1182.971
|
1352.523
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.473
|
5.648
|
0.190
|
1.479
|
-2.730
|
0.636
|
2.060
|
-1.392
|
— | — | — | — | — |