Hg_chrom2_TN10mRNA_3330
Organism: Heterodera glycines Gene Locus: chr2:6399788-6401171 Feature type: polypeptideProtein Sequence
Length: 353
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.56 | 0.725 | 0.67 | 0.0 | 4.91 | 0.654 | 0.371 | 0.567 | 1.322 | 0.804 | 2.146 | 0.833 | 1.102 | 0.654 | 1.445 | 0.728 | 0.325 | 0.3 | 0.218 | 0.25 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3183
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_21901
|
— |
2-pJ2_J3_J4_Female
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
chloroplast
|
REKEKEEEKEEEEKEREKEDREKEKEEEKEEEEKEREKEDREKEKEEEKEEEEKEREKEDREKEKEEEKEEEEKEREKEDIEKEKEEEKEEEDKEREKEDREKEKEEEKEEEEKEREKEDREK
|
36-56
|
1.000
|
6-55
|
0.984
|
1-27
|
0.609
|
0.999
|
0.000
|
0.000
|
0.618
|
0.173
|
0.021
|
0.550
|
0.136
|
0.090
|
0.046
|
0.003
|
0.088
|
0.319
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006829
|
1.000
|
1.000
|
Hsc_gene_21901.t1
|
Hsc_gene_21901.t1
|
— | — | — |
HUX57294
|
0.560
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
181-353
|
1.000
|
1-180
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.975
|
42327.710
|
4.399
|
-40.000
|
55.524
|
6.232
|
68.272
|
31.728
|
22.380
|
33.144
|
27.195
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
green
|
3222.453
|
6.198
|
71.618
|
170.596
|
194.143
|
123.232
|
52.850
|
40.901
|
1848.005
|
12464.903
|
7914.803
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.299
|
4.646
|
1.363
|
— |
-0.642
|
-1.212
|
-1.696
|
0.511
|
-2.847
|
-3.266
|
-4.125
|
— | — |