Hg_chrom2_TN10mRNA_3335
Organism: Heterodera glycines Gene Locus: chr2:6432421-6433250 Feature type: polypeptideProtein Sequence
Length: 133
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.311 | 1.749 | 0.957 | 0.778 | 0.627 | 1.35 | 1.164 | 0.752 | 1.003 | 0.711 | 0.342 | 0.885 | 0.835 | 0.868 | 0.767 | 0.537 | 1.972 | 1.367 | 1.735 | 0.442 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3188
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.438
|
0.297
|
0.100
|
0.566
|
0.356
|
0.507
|
0.356
|
0.007
|
0.373
|
0.296
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003309
|
2.000
|
1.000
|
Hsc_gene_21690.t1
|
Hsc_gene_21690.t1
|
— |
Q5XWE1.1 Profilin [Citrullus lanatus]
|
KAI6244127.1 Profilin [Aphelenchoides fujianensis]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003779
|
GO:0005575_0.741|GO:0008150_0.736|GO:0110165_0.718|GO:0009987_0.664|GO:0005622_0.589|GO:0071840_0.540|GO:0016043_0.538|GO:0003674_0.522
|
IPR005455+6-121_6-131+|IPR036140+6-111+|IPR048278+5-113+
|
SM00392+6-131+
|
PF00235+5-113+Profilin
|
— |
PTHR11604+6-121+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-133
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
14096.700
|
4.700
|
-3.000
|
16.541
|
8.271
|
45.113
|
54.887
|
7.519
|
9.023
|
65.414
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
26.520
|
113.466
|
3.330
|
0.757
|
0.341
|
2.385
|
5.282
|
102.157
|
0.691
|
30.113
|
17.504
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.313
|
-7.377
|
-2.027
|
— |
2.848
|
— |
5.315
|
-4.131
|
— | — | — | — | — |
No JSON data available for plots.