Hg_chrom2_TN10mRNA_3338
Organism: Heterodera glycines Gene Locus: chr2:6445320-6447924 Feature type: polypeptideProtein Sequence
Length: 296
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.668 | 1.1 | 0.799 | 0.699 | 1.52 | 1.213 | 0.282 | 2.365 | 0.976 | 1.689 | 1.382 | 1.987 | 0.938 | 0.455 | 1.517 | 0.917 | 0.665 | 0.87 | 1.299 | 0.497 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3190
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.778
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRNHR,RRDYTDHLRALRVRLR,RRIILDQWRTLLKQKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.458
|
0.418
|
0.017
|
0.372
|
0.136
|
0.089
|
0.141
|
0.021
|
0.153
|
0.242
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001823
|
2.000
|
2.000
|
Hsc_gene_17145.t1;Hsc_gene_21898.t1
|
Hsc_gene_21898.t1;Hsc_gene_21899.t1
|
— | — |
KAI3415296.1 hypothetical protein GPALN_004909 [Globodera pallida]
|
WP_339715790
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
294-296
|
1.000
|
1-293
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
34856.330
|
9.542
|
16.000
|
34.797
|
11.486
|
54.730
|
45.270
|
21.284
|
13.514
|
37.838
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
3018.905
|
961.090
|
827.035
|
955.603
|
1167.753
|
1184.748
|
955.191
|
1476.935
|
1535.222
|
9233.160
|
5934.044
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.446
|
-0.145
|
0.317
|
0.258
|
— |
-0.301
|
— |
-0.487
|
-2.677
|
— |
-2.583
|
— | — |
No JSON data available for plots.