Hg_chrom2_TN10mRNA_3340
Organism: Heterodera glycines Gene Locus: chr2:6451024-6458024 Feature type: polypeptideProtein Sequence
Length: 800
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.872 | 1.047 | 0.614 | 1.164 | 1.521 | 0.929 | 0.565 | 1.438 | 0.917 | 1.25 | 0.852 | 1.176 | 1.25 | 1.034 | 1.25 | 1.393 | 0.881 | 0.777 | 1.346 | 0.551 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3192
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.521
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
nucleus
|
KRKR,RKRK
|
— | — | — | — |
1-27
|
0.910
|
0.744
|
1.000
|
1.000
|
0.180
|
0.114
|
0.023
|
0.183
|
0.194
|
0.137
|
0.268
|
0.190
|
0.790
|
0.336
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001839
|
1.000
|
3.000
|
Hsc_gene_21896.t1;Hsc_gene_21896.t2;Hsc_gene_21896.t3
|
Hsc_gene_21895.t1;Hsc_gene_21896.t1;Hsc_gene_21896.t2;Hsc_gene_21896.t3
|
— |
P23352.3 Anosmin-1 [Homo sapiens]
|
KAI1721610.1 WAP-type (Whey acidic protein) 'four-disulfide core' domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005576|GO:0030414
|
GO:0005575_0.935|GO:0110165_0.935|GO:0008150_0.792|GO:0009987_0.744|GO:0003674_0.693|GO:0071944_0.682|GO:0050896_0.657|GO:0032501_0.647|GO:0032502_0.622|GO:0048856_0.622|GO:0071840_0.600|GO:0016043_0.599|GO:0007275_0.596|GO:0005576_0.591|GO:0048731_0.584|GO:0048869_0.574|GO:0030154_0.569|GO:0048468_0.563|GO:0007399_0.557|GO:0042221_0.554|GO:0022008_0.549|GO:0009653_0.537|GO:0048699_0.535|GO:0030182_0.534|GO:0009605_0.529|GO:0030030_0.527|GO:0048666_0.527|GO:0120036_0.525|GO:0007155_0.518|GO:0031175_0.516|GO:0000902_0.513|GO:0040011_0.510|GO:0048667_0.508|GO:0048812_0.508|GO:0048858_0.508|GO:0120039_0.508|GO:0007409_0.506|GO:0061564_0.506|GO:0006935_0.504|GO:0042330_0.504|GO:0007411_0.501|GO:0097485_0.501
|
IPR003961+174-267_176-282_177-274_285-399_631-717_637-718+|IPR008197+119-167_122-166_122-167+|IPR013783+175-294_617-728+|IPR036116+201-398_638-719+|IPR036645+115-166_116-166+|IPR042447+34-412+
|
SM00060+174-267_285-399_631-717+|SM00217+122-167+
|
PF00095+122-166+WAP-type_(Whey_Acidic_Protein)_'four-disulfide_core'
|
— |
PTHR14131+34-412+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
565-637
|
2.000
|
1-564;638-800
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
90107.270
|
6.886
|
5.500
|
27.125
|
11.000
|
50.375
|
49.625
|
14.625
|
12.500
|
49.125
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
685.153
|
481.082
|
839.581
|
541.534
|
323.405
|
457.895
|
405.742
|
318.773
|
23.142
|
1717.182
|
991.165
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
— |
-0.523
|
-0.776
|
0.517
|
— |
-0.630
|
0.492
|
-6.324
|
4.736
|
— | — | — |