Hg_chrom2_TN10mRNA_3341
Organism: Heterodera glycines Gene Locus: chr2:6461490-6463766 Feature type: polypeptideProtein Sequence
Length: 288
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.606 | 1.534 | 0.821 | 0.239 | 1.331 | 1.157 | 0.827 | 1.91 | 1.312 | 1.032 | 1.0 | 0.613 | 1.64 | 0.801 | 0.567 | 1.091 | 0.797 | 1.21 | 1.603 | 0.919 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3193
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-22
|
0.994
|
1.000
|
0.000
|
0.000
|
0.239
|
0.128
|
0.079
|
0.442
|
0.228
|
0.290
|
0.123
|
0.018
|
0.233
|
0.784
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006831
|
1.000
|
1.000
|
Hsc_gene_21894.t1
|
Hsc_gene_21894.t1;Hsc_gene_8957.t1
|
— |
Q10462.3 Putative carbonic anhydrase 5 [Caenorhabditis elegans]
|
KAH7713963.1 CRE-CAH-5 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004089|GO:0008270
|
GO:0005575_0.781|GO:0110165_0.781|GO:0003674_0.760|GO:0008150_0.697|GO:0003824_0.618|GO:0005622_0.602|GO:0005737_0.589|GO:0016020_0.559
|
IPR001148+34-281_36-280_40-276+|IPR018338+131-147+|IPR023561+17-274+|IPR036398+29-283_35-276+
|
SM01057+36-280+
|
PF00194+40-276+Eukaryotic-type_carbonic_anhydrase
|
— |
PTHR18952+17-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-288
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
32595.650
|
5.948
|
-3.500
|
25.694
|
14.931
|
49.306
|
50.694
|
13.194
|
12.500
|
48.611
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
1889.696
|
1.052
|
2.172
|
1.624
|
6297.374
|
9916.318
|
2953.443
|
413.183
|
38.405
|
894.178
|
527.418
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
11.888
|
0.670
|
-1.738
|
-4.709
|
2.987
|
-4.622
|
— |
3.059
|
— | — |