Hg_chrom2_TN10mRNA_3342
Organism: Heterodera glycines Gene Locus: chr2:6464435-6467560 Feature type: polypeptideProtein Sequence
Length: 471
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.012 | 1.827 | 0.656 | 0.512 | 0.885 | 1.089 | 0.708 | 1.38 | 1.321 | 1.377 | 0.772 | 1.124 | 1.533 | 0.898 | 0.737 | 0.971 | 1.044 | 0.933 | 0.98 | 0.749 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3194
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
mitochondria
|
RKLADNLDPTHKFRNK
|
46-66
|
0.997
|
— | — |
1-29
|
0.991
|
1.000
|
0.000
|
0.000
|
0.275
|
0.309
|
0.021
|
0.517
|
0.135
|
0.313
|
0.156
|
0.061
|
0.202
|
0.568
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003302
|
2.000
|
1.000
|
Hsc_gene_21893.t1
|
Hsc_gene_19456.t1;Hsc_gene_21893.t1;Hsc_gene_8956.t1
|
— |
Q9ZBU1.1 Alditol oxidase [Streptomyces coelicolor A3(2)]
|
KAI1703529.1 FAD binding domain-containing protein [Ditylenchus destructor]
|
HTE26608
|
0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003885|GO:0016020|GO:0016899|GO:0050660|GO:0071949
|
GO:0008150_0.786|GO:0003674_0.691|GO:0008152_0.638|GO:0005575_0.609|GO:0110165_0.607|GO:0003824_0.574|GO:0044281_0.542|GO:0009987_0.540|GO:0016020_0.540|GO:0006766_0.507
|
IPR006094+66-190+|IPR007173+330-461+|IPR010031+42-279_47-465_327-467+|IPR016166+59-223+|IPR016167+45-111+|IPR016169+118-327+|IPR016171+432-463+|IPR036318+49-222+
|
— |
PF01565+66-190+FAD_binding_domain|PF04030+330-461+D-arabinono-1,4-lactone_oxidase
|
— |
PTHR43762+47-465+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-471
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
52248.620
|
7.295
|
5.500
|
20.382
|
12.102
|
45.648
|
54.352
|
11.465
|
8.917
|
51.592
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
224.442
|
40.186
|
213.999
|
169.716
|
200.874
|
180.745
|
304.968
|
215.446
|
4.660
|
481.216
|
276.978
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.185
|
1.942
|
-0.225
|
0.210
|
— |
0.763
|
— |
0.643
|
-6.828
|
5.462
|
— | — |
-6.081
|