Hg_chrom2_TN10mRNA_3345
Organism: Heterodera glycines Gene Locus: chr2:6471719-6474887 Feature type: polypeptideProtein Sequence
Length: 699
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.815 | 1.098 | 0.65 | 0.148 | 1.144 | 1.137 | 0.647 | 0.358 | 1.526 | 1.489 | 1.517 | 2.02 | 0.993 | 1.155 | 1.226 | 1.124 | 0.516 | 0.867 | 0.88 | 0.589 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3196
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KKRLGEKWKNKMDKK,KKKIIKLSKREAKKRQSK,RRIYLLRIIASANGKKKII,KRQSKTIKGENEMMEWKKR,KKSKWTMERPKLEEKFRIR,DKRKRQKIVRLHFSAKNRRRMKR
|
— | — | — | — |
1-19
|
0.979
|
0.923
|
0.000
|
0.000
|
0.343
|
0.206
|
0.089
|
0.043
|
0.171
|
0.045
|
0.180
|
0.289
|
0.184
|
0.941
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001138
|
2.000
|
3.000
|
Hsc_gene_21705.t1;Hsc_gene_21889.t1;Hsc_gene_8962.t1
|
Hsc_gene_21705.t1;Hsc_gene_21889.t1;Hsc_gene_8962.t1
|
— | — |
KAI1707688.1 moulting cycle domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR21523+91-690+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
134-199
|
2.000
|
1-133;200-699
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
78813.220
|
10.528
|
41.500
|
27.182
|
7.439
|
47.353
|
52.647
|
16.738
|
10.443
|
43.920
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
741.253
|
10.896
|
95.702
|
6.518
|
8.197
|
13.519
|
34.699
|
20.777
|
2.665
|
3169.619
|
1812.353
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.906
|
-0.878
|
-3.769
|
— | — |
1.369
|
— |
0.881
|
-10.309
|
— |
-8.076
|
— | — |