Hg_chrom2_TN10mRNA_3348
Organism: Heterodera glycines Gene Locus: chr2:6478701-6480122 Feature type: polypeptideProtein Sequence
Length: 263
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.15 | 1.68 | 0.899 | 0.393 | 0.697 | 1.267 | 0.905 | 1.141 | 1.521 | 1.233 | 0.403 | 1.342 | 2.218 | 1.243 | 0.776 | 1.032 | 0.561 | 0.691 | 0.585 | 0.783 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3199
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-25
|
0.891
|
0.998
|
0.000
|
0.000
|
0.518
|
0.147
|
0.023
|
0.751
|
0.265
|
0.211
|
0.146
|
0.022
|
0.054
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003312
|
2.000
|
1.000
|
Hsc_gene_21702.t1
|
Hsc_gene_21702.t1
|
— | — |
KAI1724717.1 phospholipase/Carboxylesterase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0005575_0.784|GO:0110165_0.781|GO:0003674_0.688|GO:0008150_0.684|GO:0005622_0.668|GO:0005737_0.668|GO:0016020_0.667|GO:0003824_0.597|GO:0043226_0.571|GO:0043227_0.566|GO:0008152_0.558|GO:0043229_0.556|GO:0043231_0.552|GO:0016787_0.526|GO:0016788_0.502
|
IPR003140+65-145_148-258+|IPR029058+56-262_68-260+|IPR050565+67-260+
|
— |
PF02230+65-145_148-258+Phospholipase/Carboxylesterase
|
— |
PTHR10655+67-260+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-263
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
28898.780
|
5.244
|
-4.000
|
17.871
|
13.688
|
40.684
|
59.316
|
8.745
|
9.125
|
52.471
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
34.830
|
51.531
|
76.615
|
89.001
|
15.491
|
16.935
|
17.658
|
48.410
|
44.051
|
0.976
|
19.437
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.652
|
0.326
|
-2.561
|
— | — |
1.406
|
-1.308
|
— | — | — | — | — |