Hg_chrom2_TN10mRNA_3350
Organism: Heterodera glycines Gene Locus: chr2:6480509-6484358 Feature type: polypeptideProtein Sequence
Length: 756
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.092 | 0.954 | 0.697 | 0.958 | 0.948 | 1.187 | 1.055 | 0.992 | 1.205 | 1.376 | 0.501 | 1.012 | 1.139 | 0.661 | 1.296 | 1.304 | 0.781 | 0.982 | 1.832 | 0.428 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3200
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
57-90
|
1.000
|
— | — |
0.001
|
— | — |
0.363
|
0.089
|
0.040
|
0.439
|
0.180
|
0.405
|
0.247
|
0.064
|
0.276
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001840
|
2.000
|
2.000
|
Hsc_gene_21701.t1;Hsc_gene_21701.t2
|
Hsc_gene_21701.t1;Hsc_gene_21701.t2;Hsc_gene_21701.t3;Hsc_gene_23149.t1;Hsc_gene_23149.t2;Hsc_gene_23150.t1
|
— |
Q9P2H3.3 Intraflagellar transport protein 80 homolog [Homo sapiens]
|
KAI1723384.1 intraflagellar transport protein 80 like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.902|GO:0110165_0.888|GO:0016020_0.755|GO:0043226_0.726|GO:0008150_0.696|GO:0043227_0.637|GO:0009987_0.631|GO:0071944_0.619|GO:0005622_0.593|GO:0005886_0.566|GO:0032991_0.558|GO:0043229_0.526|GO:0065007_0.519
|
IPR001680+119-162_164-204_205-244_211-244_212-244_246-284_256-278_285-325+|IPR015943+6-203_204-370+|IPR036322+100-326_297-566+
|
SM00320+119-162_164-204_205-244_246-284_285-325+
|
PF00400+211-244_256-278+WD_domain,_G-beta_repeat
|
— |
PTHR24098+17-712+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-756
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
82521.070
|
7.492
|
8.500
|
21.164
|
9.921
|
43.783
|
56.217
|
11.640
|
9.524
|
52.778
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
256.246
|
267.608
|
406.945
|
193.986
|
49.762
|
28.626
|
86.554
|
175.359
|
249.104
|
480.933
|
381.578
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.374
|
-0.602
|
-0.959
|
-1.998
|
-0.782
|
1.608
|
2.514
|
-0.877
|
— | — | — | — | — |
No JSON data available for plots.