Hg_chrom2_TN10mRNA_3351
Organism: Heterodera glycines Gene Locus: chr2:6480509-6484456 Feature type: polypeptideProtein Sequence
Length: 800
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.032 | 0.93 | 0.727 | 0.905 | 1.042 | 1.25 | 0.908 | 1.062 | 1.139 | 1.486 | 0.568 | 1.103 | 1.076 | 0.625 | 1.352 | 1.196 | 0.861 | 0.966 | 1.827 | 0.515 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3200
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
57-90
|
1.000
|
— | — |
0.001
|
— | — |
0.322
|
0.093
|
0.026
|
0.544
|
0.189
|
0.440
|
0.217
|
0.049
|
0.285
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001840
|
2.000
|
2.000
|
Hsc_gene_21701.t1;Hsc_gene_21701.t2
|
Hsc_gene_21701.t1;Hsc_gene_21701.t2;Hsc_gene_21701.t3;Hsc_gene_23149.t1;Hsc_gene_23149.t2;Hsc_gene_23150.t1
|
— |
Q9P2H3.3 Intraflagellar transport protein 80 homolog [Homo sapiens]
|
KAI1723384.1 intraflagellar transport protein 80 like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.911|GO:0110165_0.903|GO:0016020_0.787|GO:0043226_0.754|GO:0008150_0.695|GO:0043227_0.676|GO:0009987_0.641|GO:0071944_0.630|GO:0005622_0.624|GO:0005886_0.605|GO:0032991_0.581|GO:0043229_0.547|GO:0065007_0.534|GO:0050789_0.503
|
IPR001680+119-162_164-204_205-244_211-244_212-244_246-284_256-278_285-325+|IPR015943+6-203_204-432+|IPR036322+100-329_297-566+
|
SM00320+119-162_164-204_205-244_246-284_285-325+
|
PF00400+211-244_256-278+WD_domain,_G-beta_repeat
|
— |
PTHR24098+17-790+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
791-800
|
1.000
|
1-790
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.736
|
88564.170
|
7.514
|
9.500
|
22.750
|
10.125
|
45.250
|
54.750
|
12.500
|
10.250
|
50.375
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
256.246
|
267.608
|
406.945
|
193.986
|
49.762
|
28.626
|
86.554
|
175.359
|
249.104
|
480.933
|
381.578
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.374
|
-0.602
|
-0.959
|
-1.998
|
-0.782
|
1.608
|
2.514
|
-0.877
|
— | — | — | — | — |
No JSON data available for plots.