Hg_chrom2_TN10mRNA_3352
Organism: Heterodera glycines Gene Locus: chr2:6485935-6487784 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.048 | 1.327 | 1.092 | 0.621 | 1.602 | 1.001 | 0.715 | 0.901 | 1.001 | 1.217 | 1.32 | 1.237 | 2.085 | 0.52 | 0.858 | 0.944 | 0.492 | 0.728 | 0.693 | 0.618 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3201
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.451
|
0.191
|
0.017
|
0.688
|
0.119
|
0.267
|
0.145
|
0.021
|
0.234
|
0.170
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006832
|
1.000
|
1.000
|
Hsc_gene_21700.t1
|
Hsc_gene_21700.t1;Hsc_gene_23148.t1
|
— | — |
KAI3417518.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.808|GO:0009987_0.634|GO:0005575_0.621|GO:0110165_0.614|GO:0005622_0.596|GO:0005737_0.559|GO:0043226_0.531|GO:0003674_0.528|GO:0016020_0.518|GO:0043229_0.517
|
IPR000210+165-233_166-263_168-262+|IPR002083+42-135+|IPR008974+8-161+|IPR011333+164-291_168-261+
|
SM00225+166-263+
|
PF00651+168-262+BTB/POZ_domain|PF00917+42-135+MATH_domain
|
— |
PTHR47022+24-305+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19
|
1.000
|
20-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
37681.660
|
5.205
|
-6.000
|
30.330
|
12.312
|
49.550
|
50.450
|
14.715
|
15.616
|
45.646
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
52.235
|
161.193
|
90.836
|
31.229
|
32.499
|
24.498
|
77.475
|
14.354
|
6.911
|
61.312
|
37.997
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.062
|
-2.505
|
-1.428
|
— | — |
1.670
|
-0.875
|
2.575
|
— | — | — | — | — |
No JSON data available for plots.