Hg_chrom2_TN10mRNA_3356
Organism: Heterodera glycines Gene Locus: chr2:6503212-6506555 Feature type: polypeptideProtein Sequence
Length: 518
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 0.943 | 0.913 | 0.799 | 1.223 | 0.99 | 0.506 | 1.158 | 1.287 | 1.67 | 0.995 | 1.249 | 1.609 | 0.817 | 1.221 | 1.048 | 0.823 | 0.79 | 1.782 | 0.681 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3205
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.922
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.466
|
0.180
|
0.020
|
0.563
|
0.291
|
0.162
|
0.130
|
0.035
|
0.117
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001841
|
1.000
|
3.000
|
Hsc_gene_1945.t1;Hsc_gene_21696.t1;Hsc_gene_21696.t2
|
Hsc_gene_21941.t1;Hsc_gene_21941.t2
|
— |
F1QFR9.2 Proteasome activator complex subunit 4A [Danio rerio]
|
KAI1719470.1 proteasome activator complex subunit 4 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016504|GO:0070577|GO:0070628
|
GO:0005575_0.905|GO:0110165_0.905|GO:0005622_0.835|GO:0016020_0.793|GO:0043226_0.763|GO:0043229_0.747|GO:0043227_0.728|GO:0043231_0.694|GO:0008150_0.607|GO:0005634_0.602|GO:0009987_0.549|GO:0003674_0.523|GO:0005737_0.509
|
IPR016024+86-438+|IPR035309+8-480+
|
— | — | — |
PTHR32170+8-480+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-518
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
59785.020
|
7.589
|
7.000
|
27.220
|
12.741
|
47.490
|
52.510
|
14.865
|
12.355
|
43.243
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
505.224
|
527.055
|
507.528
|
457.423
|
515.342
|
466.431
|
629.582
|
478.212
|
172.452
|
737.926
|
495.580
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.285
|
-0.342
|
— |
0.139
|
— |
0.443
|
— |
0.540
|
— | — | — | — | — |
No JSON data available for plots.