Hg_chrom2_TN10mRNA_3365
Organism: Heterodera glycines Gene Locus: chr2:6539088-6544535 Feature type: polypeptideProtein Sequence
Length: 821
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 1.19 | 0.974 | 0.966 | 0.589 | 1.312 | 0.392 | 1.523 | 0.812 | 1.416 | 0.646 | 1.935 | 0.812 | 1.195 | 1.243 | 1.862 | 0.899 | 1.089 | 1.031 | 0.573 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3213
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.713
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRSR
|
— | — |
29-59
|
0.816
|
— | — |
0.000
|
— | — |
0.273
|
0.266
|
0.017
|
0.677
|
0.168
|
0.317
|
0.272
|
0.044
|
0.373
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006837
|
1.000
|
1.000
|
Hsc_gene_21688.t1
|
Hsc_gene_21688.t1
|
— | — |
KAH7731886.1 RhoGAP domain-containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007165|GO:0008289
|
GO:0008150_0.967|GO:0009987_0.814|GO:0005575_0.752|GO:0110165_0.747|GO:0065007_0.708|GO:0050789_0.706|GO:0005622_0.676|GO:0032502_0.651|GO:0048856_0.651|GO:0050896_0.628|GO:0051716_0.599|GO:0050794_0.586|GO:0009653_0.538|GO:0043226_0.536|GO:0003674_0.529|GO:0043229_0.520|GO:0032501_0.512|GO:0005488_0.508
|
IPR000198+349-567_362-564_365-512+|IPR002913+642-810+|IPR008936+296-578_342-519+|IPR023393+624-814+
|
SM00324+362-564+
|
PF00620+365-512+RhoGAP_domain|PF01852+642-810+START_domain
|
— |
PTHR12659+67-810+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-207
|
1.000
|
208-821
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
91577.450
|
8.452
|
24.500
|
22.290
|
9.257
|
51.035
|
48.965
|
13.398
|
8.892
|
54.324
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
1023.177
|
994.434
|
994.165
|
691.317
|
956.922
|
1174.360
|
1993.801
|
1396.566
|
76.284
|
1343.601
|
800.465
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.231
|
-0.662
|
-0.415
|
0.438
|
0.310
|
0.774
|
— |
0.654
|
-4.264
|
3.383
|
— | — | — |
No JSON data available for plots.