Hg_chrom2_TN10mRNA_3367
Organism: Heterodera glycines Gene Locus: chr2:6548015-6549864 Feature type: polypeptideProtein Sequence
Length: 382
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.883 | 1.278 | 0.952 | 0.993 | 0.916 | 0.738 | 0.623 | 0.916 | 0.873 | 1.804 | 0.754 | 0.924 | 2.036 | 0.654 | 1.068 | 1.085 | 0.429 | 1.349 | 1.007 | 0.924 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3215
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.932
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KKSLLQLNGDIERKTKRN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.267
|
0.431
|
0.028
|
0.287
|
0.722
|
0.302
|
0.564
|
0.004
|
0.137
|
0.308
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006839
|
1.000
|
1.000
|
Hsc_gene_21686.t1
|
Hsc_gene_21686.t1
|
— | — |
KAH7727768.1 oxidoreductaseshort chain dehydrogenase/reductase family protein [Aphelenchus avenae]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.946|GO:0005575_0.896|GO:0110165_0.894|GO:0009987_0.885|GO:0065007_0.666|GO:0008152_0.611|GO:0050896_0.598|GO:0044237_0.581|GO:0032501_0.558
|
IPR002347+92-168+|IPR036291+91-319+
|
— |
PF00106+92-168+short_chain_dehydrogenase
|
— |
PTHR24320+78-358+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-382
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
43127.870
|
6.803
|
1.500
|
22.775
|
13.613
|
41.361
|
58.639
|
12.042
|
10.733
|
48.953
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
732.064
|
903.355
|
608.722
|
542.717
|
570.503
|
638.111
|
695.824
|
576.798
|
646.876
|
1016.610
|
858.153
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.800
|
-0.872
|
— | — |
0.176
|
— |
-0.250
|
0.410
|
— | — | — | — | — |
No JSON data available for plots.