Hg_chrom2_TN10mRNA_3368
Organism: Heterodera glycines Gene Locus: chr2:6553344-6556298 Feature type: polypeptideProtein Sequence
Length: 393
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.917 | 0.947 | 0.972 | 0.175 | 1.696 | 1.24 | 0.848 | 0.509 | 0.622 | 0.86 | 1.234 | 1.347 | 0.919 | 0.685 | 1.35 | 1.236 | 1.335 | 1.118 | 0.196 | 0.449 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3216
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
KRPTERRTKVKTKKA
|
— | — |
11-34
|
0.998
|
— | — |
0.000
|
— | — |
0.106
|
0.258
|
0.046
|
0.358
|
0.065
|
0.026
|
0.103
|
0.104
|
0.199
|
0.957
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006840
|
1.000
|
1.000
|
Hsc_gene_21685.t1
|
Hsc_gene_21685.t1
|
— |
A2AX52.2 Collagen alpha-4(VI) chain [Mus musculus]
|
KAH7731789.1 Zona pellucida-like domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.924|GO:0110165_0.913|GO:0071944_0.640|GO:0008150_0.603
|
IPR002035+156-331_158-324_158-330+|IPR036465+145-325_156-354+|IPR050525+62-346+
|
SM00327+156-331+
|
PF00092+158-324+von_Willebrand_factor_type_A_domain
|
— |
PTHR24020+62-346+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-166;335-393
|
1.000
|
167-334
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
43341.360
|
6.209
|
-1.000
|
31.298
|
6.107
|
56.997
|
43.003
|
15.776
|
15.522
|
52.672
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
150.801
|
13.007
|
470.000
|
116.706
|
17.919
|
74.274
|
13.792
|
606.165
|
50.507
|
129.926
|
95.889
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.946
|
3.027
|
-1.901
|
-2.739
|
2.066
|
-2.419
|
2.930
|
-5.318
|
— | — | — | — | — |
No JSON data available for plots.