Hg_chrom2_TN10mRNA_3369
Organism: Heterodera glycines Gene Locus: chr2:6557136-6558466 Feature type: polypeptideProtein Sequence
Length: 178
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.457 | 1.307 | 1.839 | 0.387 | 0.749 | 1.585 | 0.669 | 0.0 | 1.373 | 0.987 | 0.426 | 3.305 | 2.341 | 0.324 | 1.605 | 1.043 | 1.197 | 0.511 | 1.729 | 0.826 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3217
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.387
|
0.229
|
0.029
|
0.562
|
0.294
|
0.260
|
0.201
|
0.162
|
0.569
|
0.261
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003316
|
2.000
|
1.000
|
Hsc_gene_21678.t2
|
Hsc_gene_21678.t1;Hsc_gene_21678.t2
|
— |
P12815.2 Programmed cell death protein 6 [Mus musculus]
|
KAH7726829.1 Protein M04F3.4 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.827|GO:0110165_0.820|GO:0008150_0.786|GO:0003674_0.767|GO:0005622_0.676|GO:0016020_0.656|GO:0005737_0.648|GO:0009987_0.612|GO:0005488_0.539|GO:0043226_0.516
|
IPR002048+3-38_7-35_7-65_44-72_70-105_74-102_75-135_106-141_110-138_140-170+|IPR011992+8-167+|IPR018247+16-28_83-95+|IPR051426+7-174+
|
SM00054+7-35_44-72_74-102_110-138_140-170+
|
PF13499+7-65_75-135+EF-hand_domain_pair
|
— |
PTHR46212+7-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-178
|
5jjg_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.654
|
20903.520
|
4.411
|
-7.000
|
25.281
|
13.483
|
51.685
|
48.315
|
10.674
|
14.607
|
46.067
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
369.978
|
463.011
|
251.890
|
187.138
|
247.997
|
250.358
|
270.283
|
753.216
|
36.263
|
682.495
|
405.538
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.106
|
-1.444
|
-0.321
|
0.376
|
— | — |
1.503
|
-1.344
|
-4.371
|
— | — | — | — |
No JSON data available for plots.