Hg_chrom2_TN10mRNA_3373
Organism: Heterodera glycines Gene Locus: chr2:6587977-6591060 Feature type: polypeptideProtein Sequence
Length: 598
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.817 | 1.05 | 0.973 | 0.98 | 1.31 | 1.072 | 0.418 | 1.003 | 0.855 | 1.672 | 0.836 | 1.18 | 1.115 | 0.9 | 1.433 | 1.266 | 1.069 | 0.633 | 1.544 | 0.492 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3220
|
— | — |
1.111
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.843
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKSEEQREAEEKKRAEK,KRLVLCETPLAESEKERRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.642
|
0.242
|
0.009
|
0.475
|
0.200
|
0.133
|
0.220
|
0.022
|
0.100
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003317
|
2.000
|
1.000
|
Hsc_gene_21677.t1
|
Hsc_gene_21677.t1
|
— |
A5A779.1 Geranylgeranyl transferase type-2 subunit alpha [Sus scrofa]
|
KAI6175342.1 Geranylgeranyl transferase type-2 subunit alpha [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008318|GO:0018342
|
GO:0008150_0.811|GO:0005575_0.799|GO:0110165_0.799|GO:0005622_0.732|GO:0003674_0.646|GO:0009987_0.626|GO:0005737_0.625|GO:0016020_0.533
|
IPR002088+47-81_49-78_98-132_100-126_134-168_136-163_169-203_171-198+|IPR032675+439-584+
|
— |
PF01239+49-78_100-126_136-163_171-198+Protein_prenyltransferase_alpha_subunit_repeat
|
G3DSA:1.25.40.120:FF:000035+5-258+Geranylgeranyl_transferase_type-2_subunit_alpha
|
PTHR11129+1-429+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23
|
1.000
|
24-598
|
4gtv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
68130.580
|
6.752
|
2.000
|
27.759
|
9.699
|
51.839
|
48.161
|
14.548
|
13.211
|
47.492
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
483.151
|
260.321
|
304.855
|
318.912
|
394.466
|
475.183
|
658.959
|
425.192
|
242.605
|
867.623
|
599.758
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.174
|
0.275
|
0.283
|
0.482
|
— |
0.776
|
— | — | — | — | — |
No JSON data available for plots.