Hg_chrom2_TN10mRNA_3374
Organism: Heterodera glycines Gene Locus: chr2:6591204-6593877 Feature type: polypeptideProtein Sequence
Length: 172
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.473 | 1.352 | 1.797 | 0.401 | 0.775 | 1.342 | 0.692 | 0.0 | 1.163 | 1.257 | 0.44 | 3.42 | 2.261 | 0.224 | 1.661 | 0.997 | 1.144 | 0.529 | 1.789 | 0.855 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3221
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.328
|
0.246
|
0.012
|
0.635
|
0.550
|
0.175
|
0.310
|
0.156
|
0.157
|
0.411
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003316
|
2.000
|
1.000
|
Hsc_gene_21678.t2
|
Hsc_gene_21678.t1;Hsc_gene_21678.t2
|
— |
P12815.2 Programmed cell death protein 6 [Mus musculus]
|
KAH7726829.1 Protein M04F3.4 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.829|GO:0110165_0.822|GO:0008150_0.785|GO:0003674_0.768|GO:0005622_0.674|GO:0016020_0.657|GO:0005737_0.648|GO:0009987_0.612|GO:0005488_0.539|GO:0043226_0.513
|
IPR002048+1-29_9-32_9-59_38-66_64-99_68-96_69-129_100-135_104-132_134-164+|IPR011992+8-161+|IPR018247+10-22_77-89+|IPR051426+8-168+
|
SM00054+1-29_38-66_68-96_104-132_134-164+
|
PF13499+9-59_69-129+EF-hand_domain_pair
|
— |
PTHR46212+8-168+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-172
|
5jjg_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
20212.850
|
4.481
|
-6.000
|
25.581
|
13.372
|
50.581
|
49.419
|
11.047
|
14.535
|
45.349
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
391.411
|
753.486
|
396.751
|
297.625
|
370.695
|
412.209
|
360.517
|
1029.207
|
46.859
|
319.594
|
202.707
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.153
|
-1.477
|
-0.307
|
0.286
|
— | — |
1.234
|
-1.380
|
-2.908
|
— | — | — | — |
No JSON data available for plots.