Hg_chrom2_TN10mRNA_3376
Organism: Heterodera glycines Gene Locus: chr2:6615704-6618310 Feature type: polypeptideProtein Sequence
Length: 511
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.501 | 2.002 | 0.854 | 0.675 | 1.435 | 1.556 | 0.769 | 0.978 | 0.739 | 1.137 | 1.216 | 1.266 | 1.087 | 0.903 | 0.959 | 1.202 | 1.155 | 0.534 | 0.602 | 0.691 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3222
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.917
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKNSPTSQNDKRMDK,KRANILAKTYGDTQKKLAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.603
|
0.111
|
0.025
|
0.592
|
0.107
|
0.105
|
0.048
|
0.004
|
0.105
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003318
|
2.000
|
1.000
|
Hsc_gene_21676.t1
|
Hsc_gene_21676.t1
|
— | — | — |
XP_054793692
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003729|GO:0046872
|
— |
IPR000571+384-417_384-418_427-454_427-455_428-454+|IPR036855+383-421_426-459+|IPR045877+425-488+
|
SM00356+384-417_427-454+
|
PF00642+428-454+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)
|
G3DSA:4.10.1000.10:FF:000003+423-459+Zinc_finger_CCCH_domain-containing_protein
|
PTHR12547+425-488+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-172;259-377
|
2.000
|
173-258;378-511
|
1m9o_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
57685.240
|
6.814
|
2.000
|
27.984
|
9.002
|
58.121
|
41.879
|
14.677
|
13.307
|
49.706
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkturquoise
|
2168.932
|
2528.284
|
1896.422
|
872.698
|
897.139
|
2985.421
|
2766.429
|
7467.357
|
1219.059
|
1294.626
|
1262.240
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.644
|
-1.672
|
-1.011
|
— |
1.748
|
— |
1.216
|
-1.290
|
— | — | — | — | — |
No JSON data available for plots.