SCN Proteipedia

Hg_chrom2_TN10mRNA_3378

Organism: Heterodera glycines Gene Locus: chr2:6619404-6650204 Feature type: polypeptide

Protein Sequence

Length: 455

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.588	1.227	1.119	0.455	0.769	1.071	0.785	1.319	1.416	1.396	1.332	0.905	1.893	0.93	1.211	1.005	0.468	0.766	1.014	0.97	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3223	—	Hg_chrom2_TN10gene_3223	1.222	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	3.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRQK,KRVK	19-59	0.997	33-58	0.983	—	—	0.012	—	—	0.382	0.327	0.106	0.648	0.163	0.081	0.190	0.112	0.305	0.243

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001139	3.000	2.000	Hsc_gene_21670.t1;Hsc_gene_21670.t2	Hsc_gene_21670.t2;Hsc_gene_21673.t1	ZK909.2a;ZK909.2c;ZK909.2f;ZK909.2g;ZK909.2h;ZK909.2l;ZK909.2m	P36887.4 cAMP-dependent protein kinase catalytic subunit alpha [Sus scrofa]	NP_740956.1 cAMP-dependent protein kinase catalytic subunit [Caenorhabditis elegans];CAD45618.1 cAMP-dependent protein kinase catalytic subunit [Caenorhabditis elegans]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.957\|GO:0003674_0.894\|GO:0003824_0.894\|GO:0016740_0.894\|GO:0016772_0.887\|GO:0140096_0.882\|GO:0009987_0.879\|GO:0016301_0.877\|GO:0004672_0.874\|GO:0016773_0.874\|GO:0004674_0.808\|GO:0005575_0.798\|GO:0110165_0.798\|GO:0065007_0.768\|GO:0005622_0.767\|GO:0050789_0.755\|GO:0050794_0.706\|GO:0005488_0.654\|GO:0016020_0.619\|GO:0005737_0.615\|GO:0036094_0.611\|GO:0043167_0.611\|GO:0043168_0.591\|GO:0050896_0.587\|GO:0000166_0.580\|GO:0097159_0.580\|GO:1901265_0.580\|GO:1901363_0.580\|GO:0008152_0.577\|GO:0044237_0.574\|GO:0017076_0.569\|GO:0032553_0.561\|GO:0032555_0.561\|GO:0097367_0.561\|GO:0019538_0.559\|GO:0043170_0.559\|GO:0044238_0.559\|GO:0051716_0.547\|GO:0043226_0.532\|GO:0030554_0.524\|GO:0032502_0.516\|GO:0032559_0.516\|GO:0071840_0.508	IPR000719+148-402_149-402+\|IPR000961+403-455+\|IPR008271+267-279+\|IPR011009+139-439+\|IPR017441+154-177+\|IPR044109+146-435+	SM00133+403-455+\|SM00220+148-402+	PF00069+149-402+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000005+232-422+cAMP-dependent_protein_kinase_catalytic_subunit_alpha\|G3DSA:3.30.200.20:FF:000005+145-237+cAMP-dependent_protein_kinase_catalytic_subunit	PTHR24353+49-442+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-455	1ctp_E	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.845	52243.160	9.948	24.000	28.132	14.066	47.473	52.527	17.363	10.769	44.176

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	5234.610	6865.844	8411.103	3487.050	1796.382	3644.371	2081.261	8506.340	7341.222	4348.370	5631.021

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.115	-1.161	-0.989	1.035	-0.799	1.122	-1.891	—	—	—	—	—

No JSON data available for plots.

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