Hg_chrom2_TN10mRNA_3385
Organism: Heterodera glycines Gene Locus: chr2:6658297-6660317 Feature type: polypeptideProtein Sequence
Length: 487
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.385 | 0.573 | 0.971 | 0.85 | 0.787 | 0.632 | 1.124 | 0.821 | 1.004 | 1.554 | 0.404 | 1.087 | 1.141 | 0.948 | 1.257 | 1.173 | 0.943 | 0.933 | 1.737 | 0.423 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3228
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.463
|
0.272
|
0.047
|
0.745
|
0.188
|
0.273
|
0.310
|
0.162
|
0.056
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006842
|
1.000
|
1.000
|
Hsc_gene_21666.t1
|
Hsc_gene_21666.t1
|
— |
P09099.1 Xylulose kinase [Escherichia coli K-12]
|
WP_261519309.1 xylulokinase [Chelativorans intermedius];MCT8997684.1 xylulokinase [Chelativorans intermedius]
|
WP_148916723
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004856|GO:0005975|GO:0005997|GO:0016301|GO:0016773
|
GO:0008150_0.939|GO:0003674_0.838|GO:0009987_0.746|GO:0008152_0.696|GO:0003824_0.680|GO:0044238_0.615|GO:0005575_0.610|GO:0016740_0.604|GO:0110165_0.604|GO:0044237_0.590|GO:0016772_0.573|GO:0016301_0.570|GO:0005975_0.542|GO:0044281_0.530|GO:0016773_0.511
|
IPR000577+1-487+|IPR006000+1-483_3-479+|IPR018483+127-139+|IPR018484+1-242+|IPR018485+252-433+|IPR043129+2-244_244-483+|IPR050406+2-484+
|
— |
PF00370+1-242+FGGY_family_of_carbohydrate_kinases,_N-terminal_domain|PF02782+252-433+FGGY_family_of_carbohydrate_kinases,_C-terminal_domain
|
— |
PTHR43095+2-484+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-487
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
52080.560
|
6.106
|
-2.000
|
20.534
|
9.446
|
39.425
|
60.575
|
10.472
|
10.062
|
56.674
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
191.258
|
36.336
|
89.373
|
118.977
|
346.188
|
676.592
|
501.094
|
262.384
|
36.540
|
47.743
|
42.942
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.066
|
1.574
|
0.524
|
1.510
|
0.981
|
-0.423
|
-1.476
|
1.078
|
— | — | — | — | — |
No JSON data available for plots.