Hg_chrom2_TN10mRNA_3386
Organism: Heterodera glycines Gene Locus: chr2:6660299-6662958 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.768 | 0.978 | 0.71 | 0.828 | 0.951 | 0.616 | 0.679 | 1.051 | 1.668 | 1.42 | 1.411 | 1.237 | 2.002 | 0.578 | 0.797 | 1.373 | 0.738 | 0.865 | 0.693 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3229
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KKRP
|
18-38
|
0.997
|
— | — | — | — |
0.063
|
— | — |
0.085
|
0.074
|
0.010
|
0.163
|
0.241
|
0.176
|
0.313
|
0.005
|
0.164
|
0.934
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006843
|
1.000
|
1.000
|
Hsc_gene_21665.t1
|
Hsc_gene_21665.t1
|
— |
C1IBY0.1 Tabserin [Tabanus yao]
|
KAI6181328.1 Peptidase S1 domain-containing protein [Aphelenchoides besseyi];KAI6212185.1 Peptidase S1 domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.944|GO:0005575_0.921|GO:0110165_0.915|GO:0009987_0.896|GO:0003674_0.865|GO:0016020_0.860|GO:0065007_0.830|GO:0005622_0.827|GO:0050789_0.811|GO:0050896_0.798|GO:0043226_0.796|GO:0050794_0.788|GO:0043229_0.786|GO:0071944_0.770|GO:0005488_0.768|GO:0032501_0.768|GO:0051716_0.767|GO:0005737_0.762|GO:0043227_0.761|GO:0005886_0.756|GO:0032502_0.742|GO:0048856_0.741|GO:0043231_0.739|GO:0007154_0.738|GO:0023052_0.736|GO:0048518_0.728|GO:0006950_0.723|GO:0007165_0.722|GO:0048522_0.713|GO:0065008_0.709|GO:0010646_0.704|GO:0023051_0.704|GO:0048583_0.699|GO:0003824_0.698|GO:0009966_0.692|GO:0040007_0.691|GO:0035556_0.688|GO:0010647_0.687|GO:1902531_0.687|GO:0023056_0.685|GO:0048584_0.683|GO:0048589_0.683|GO:0009967_0.681|GO:0048870_0.681|GO:0040011_0.679|GO:0016477_0.678|GO:0031099_0.678|GO:1902533_0.678|GO:0009611_0.677|GO:0050878_0.676|GO:0030334_0.675|GO:0040012_0.675|GO:0040017_0.675|GO:0042060_0.675|GO:0042246_0.675|GO:2000145_0.675|GO:0030335_0.674|GO:2000147_0.674|GO:0016787_0.673|GO:0007596_0.670|GO:0007599_0.670|GO:0031929_0.670|GO:0032006_0.670|GO:0032008_0.670|GO:0050817_0.670|GO:0140096_0.669|GO:0008233_0.660|GO:0008289_0.660|GO:0004175_0.656|GO:0005543_0.656|GO:0005773_0.653|GO:0004252_0.650|GO:0008236_0.650|GO:0017171_0.650|GO:0012505_0.627|GO:0005783_0.582|GO:0005576_0.573|GO:0031974_0.571|GO:0043233_0.571|GO:0070013_0.571|GO:0005794_0.559|GO:0009986_0.556|GO:0097478_0.548|GO:0098552_0.547|GO:0005788_0.540|GO:0005796_0.540|GO:0009897_0.540
|
IPR001254+34-237_58-218_62-311+|IPR001314+64-79_119-133_202-214+|IPR009003+32-240+|IPR018114+74-79+|IPR043504+40-262+|IPR051333+48-253+
|
SM00020+34-237+
|
PF00089+58-218+Trypsin
|
— |
PTHR24260+48-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
37451.650
|
9.553
|
15.500
|
24.925
|
12.913
|
45.646
|
54.354
|
15.315
|
9.610
|
45.646
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
red
|
125.469
|
8.050
|
149.494
|
121.813
|
92.578
|
176.516
|
381.970
|
183.786
|
11.359
|
122.578
|
74.913
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.986
|
3.785
|
— |
-0.427
|
0.945
|
1.120
|
— |
1.197
|
— | — | — | — | — |
No JSON data available for plots.