Hg_chrom2_TN10mRNA_3387
Organism: Heterodera glycines Gene Locus: chr2:6669942-6696906 Feature type: polypeptideProtein Sequence
Length: 849
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.205 | 1.26 | 0.878 | 0.894 | 1.61 | 2.144 | 0.813 | 2.179 | 0.759 | 0.732 | 0.75 | 1.386 | 0.883 | 0.68 | 1.37 | 0.925 | 0.811 | 0.66 | 0.181 | 0.589 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3230
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRK,KREKVIDRIQCRKCKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.838
|
0.080
|
0.008
|
0.276
|
0.031
|
0.018
|
0.015
|
0.012
|
0.057
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003320
|
2.000
|
1.000
|
Hsc_gene_21663.t1
|
Hsc_gene_21663.t1
|
— | — |
KAF7635308.1 C2H2-type domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+3-36_42-66_382-406_412-436_412-442_414-436_758-782_788-813+
|
SM00355+3-36_42-66_382-406_412-436_758-782_788-813+
|
— | — |
PTHR24394+3-438+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
89-287;460-752
|
3.000
|
1-88;288-459;753-849
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.494
|
94711.510
|
6.262
|
-5.500
|
30.506
|
9.776
|
55.713
|
44.287
|
16.019
|
14.488
|
49.352
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
greenyellow
|
1190.095
|
577.797
|
1822.482
|
1039.202
|
1117.202
|
1619.366
|
1071.722
|
1582.882
|
1308.855
|
913.531
|
1082.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.427
|
0.710
|
-0.701
|
— |
0.551
|
-0.585
|
— |
-0.419
|
— | — | — | — | — |
No JSON data available for plots.