Hg_chrom2_TN10mRNA_3392
Organism: Heterodera glycines Gene Locus: chr2:6699050-6704322 Feature type: polypeptideProtein Sequence
Length: 822
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 0.934 | 0.796 | 0.797 | 1.217 | 1.154 | 0.898 | 0.669 | 1.217 | 1.233 | 0.811 | 1.145 | 1.487 | 1.029 | 1.39 | 0.956 | 0.778 | 0.885 | 1.684 | 0.537 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3234
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.740
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
PIEKRKA,KRKAPIGGEGKGRGK,KKLMKNGEKMGNRRREP
|
— | — |
52-79
|
1.000
|
— | — |
0.000
|
— | — |
0.234
|
0.272
|
0.040
|
0.597
|
0.188
|
0.512
|
0.484
|
0.048
|
0.440
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003322
|
2.000
|
1.000
|
Hsc_gene_21661.t1
|
Hsc_gene_21661.t1
|
— |
Q22036.1 Calpain-5 [Caenorhabditis elegans]
|
KAH7728797.1 calpain-5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004198|GO:0006508
|
GO:0008150_0.791|GO:0005575_0.784|GO:0110165_0.778|GO:0003674_0.733|GO:0009987_0.687|GO:0005622_0.600|GO:0016020_0.568|GO:0043226_0.516
|
IPR000169+140-151+|IPR001300+64-454_71-442_82-445_83-443+|IPR022682+508-646+|IPR022683+487-652+|IPR022684+67-90_140-156_180-205_210-233_235-262_421-442+|IPR036213+488-655+|IPR038765+67-444+|IPR050420+66-654+
|
SM00230+64-454+|SM00720+487-652+
|
PF00648+83-443+Calpain_family_cysteine_protease|PF01067+508-646+Calpain_large_subunit,_domain_III
|
— |
PTHR10183+66-654+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-822
|
6p3q_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
92143.440
|
7.872
|
9.500
|
25.182
|
10.706
|
45.134
|
54.866
|
13.504
|
11.679
|
48.783
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
955.985
|
735.090
|
2793.593
|
533.665
|
554.027
|
753.593
|
380.622
|
3461.376
|
602.018
|
276.435
|
415.971
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.699
|
-0.599
|
-2.281
|
— |
0.460
|
-0.977
|
2.108
|
-3.049
|
— | — | — | — | — |
No JSON data available for plots.