Hg_chrom2_TN10mRNA_3394
Organism: Heterodera glycines Gene Locus: chr2:6708697-6711091 Feature type: polypeptideProtein Sequence
Length: 544
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.282 | 0.855 | 0.535 | 0.887 | 0.766 | 0.801 | 1.05 | 1.195 | 1.185 | 1.242 | 0.641 | 2.271 | 1.838 | 0.813 | 0.638 | 0.709 | 0.934 | 1.281 | 1.697 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3236
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.064
|
0.201
|
0.044
|
0.240
|
0.223
|
0.321
|
0.268
|
0.003
|
0.650
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006845
|
1.000
|
1.000
|
Hsc_gene_21659.t1
|
Hsc_gene_21659.t1
|
— |
P54145.1 Putative ammonium transporter 1 [Caenorhabditis elegans]
|
KAI1696226.1 ammonium transporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008519|GO:0016020|GO:0072488
|
GO:0008150_0.952|GO:0009987_0.831|GO:0006810_0.814|GO:0051179_0.814|GO:0051234_0.814|GO:0055085_0.758|GO:0005575_0.712|GO:0110165_0.709|GO:0071705_0.704|GO:0098660_0.683|GO:0071944_0.676|GO:0005886_0.670|GO:0016020_0.670|GO:0098662_0.661|GO:0072488_0.604|GO:0003674_0.566
|
IPR001905+35-461+|IPR018047+191-216+|IPR024041+37-224_229-461+|IPR029020+12-474+
|
— |
PF00909+37-224_229-461+Ammonium_Transporter_Family
|
G3DSA:1.10.3430.10:FF:000010+18-468+Ammonium_transporter
|
PTHR11730+24-464+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
542-544
|
1.000
|
1-541
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
59498.330
|
7.226
|
5.500
|
17.279
|
14.154
|
34.743
|
65.257
|
9.743
|
7.537
|
52.390
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
purple
|
2451.716
|
490.875
|
3768.027
|
1703.856
|
2614.213
|
7383.743
|
3074.779
|
6844.872
|
707.223
|
490.705
|
583.498
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.712
|
1.658
|
-1.037
|
0.586
|
1.513
|
-1.255
|
— |
-1.014
|
— | — |
2.564
|
— | — |
No JSON data available for plots.