Hg_chrom2_TN10mRNA_3395
Organism: Heterodera glycines Gene Locus: chr2:6712041-6713214 Feature type: polypeptideProtein Sequence
Length: 194
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.539 | 0.839 | 0.656 | 1.244 | 1.632 | 0.529 | 0.552 | 1.546 | 1.375 | 1.602 | 1.093 | 1.516 | 3.436 | 0.397 | 1.368 | 0.736 | 0.423 | 0.625 | 1.19 | 0.758 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3237
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-28
|
0.763
|
0.726
|
1.000
|
1.000
|
0.019
|
0.072
|
0.071
|
0.237
|
0.383
|
0.257
|
0.187
|
0.002
|
0.431
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006846
|
1.000
|
1.000
|
Hsc_gene_21658.t1
|
— | — |
Q19746.2 Innexin-3 [Caenorhabditis elegans]
|
KAI1722122.1 innexin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.898|GO:0110165_0.898|GO:0008150_0.807|GO:0009987_0.716|GO:0030054_0.592|GO:0051179_0.548|GO:0006810_0.543|GO:0051234_0.543|GO:0065007_0.526|GO:0005911_0.508|GO:0070161_0.508
|
IPR000990+1-164_1-172_1-190_41-50_65-81+
|
— |
PF00876+1-164+Innexin
|
— |
PTHR11893+1-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
174-194
|
1.000
|
1-173
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
23192.080
|
7.626
|
4.000
|
30.412
|
19.588
|
43.814
|
56.186
|
17.010
|
13.402
|
34.021
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
845.816
|
272.563
|
2081.381
|
658.025
|
434.471
|
1170.032
|
288.341
|
1400.602
|
1060.554
|
540.498
|
763.379
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.703
|
1.135
|
-1.552
|
-0.630
|
1.444
|
-2.012
|
— |
-2.140
|
— | — | — | — | — |