SCN Proteipedia

Hg_chrom2_TN10mRNA_3397

Organism: Heterodera glycines Gene Locus: chr2:6718329-6721700 Feature type: polypeptide

Protein Sequence

Length: 310

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.488	1.05	1.232	1.557	1.183	0.993	0.806	1.452	1.505	0.741	1.369	1.139	1.523	0.806	1.382	0.507	1.005	0.635	1.737	1.044	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3239	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-Not_Clustered	0.637

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.734	0.200	0.018	0.494	0.057	0.053	0.053	0.002	0.100	0.102

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006847	1.000	1.000	Hsc_gene_21656.t1	Hsc_gene_21656.t1	—	Q5DW34.2 Histone-lysine N-methyltransferase EHMT1 [Mus musculus]	KAI1714478.1 SET domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005634\|GO:0008270\|GO:0042054	GO:0008150_0.909\|GO:0003674_0.893\|GO:0009987_0.844\|GO:0005575_0.779\|GO:0110165_0.775\|GO:0008152_0.754\|GO:0003824_0.735\|GO:0005622_0.729\|GO:0043170_0.713\|GO:0071840_0.708\|GO:0016043_0.693\|GO:0005488_0.684\|GO:0065007_0.678\|GO:0044237_0.667\|GO:0050789_0.660\|GO:0009058_0.658\|GO:0016740_0.658\|GO:0043226_0.656\|GO:0006325_0.654\|GO:0006338_0.653\|GO:0043229_0.644\|GO:0050794_0.643\|GO:0044249_0.635\|GO:0009059_0.618\|GO:0044238_0.616\|GO:0140096_0.610\|GO:0016741_0.606\|GO:0008168_0.605\|GO:0016020_0.592\|GO:0019222_0.592\|GO:0060255_0.582\|GO:0010467_0.580\|GO:0008276_0.575\|GO:0042054_0.575\|GO:0140993_0.575\|GO:0031323_0.557\|GO:0043227_0.556\|GO:0043231_0.548\|GO:0140938_0.546\|GO:0009889_0.544\|GO:0031326_0.543\|GO:0010556_0.542\|GO:0010468_0.541\|GO:0008757_0.528\|GO:0008170_0.522\|GO:0016278_0.522\|GO:0016279_0.522	IPR001214+114-232_114-238_125-232+\|IPR007728+3-104_8-104+\|IPR046341+1-262_13-259+\|IPR051357+1-259+	SM00317+114-238+\|SM00468+3-104+	PF00856+125-232+SET_domain\|PF05033+8-104+Pre-SET_motif	—	PTHR45660+1-259+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	287-310	1.000	1-286	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.713	36197.320	8.254	10.500	32.581	14.194	50.645	49.355	18.710	13.871	44.839

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	yellow	1363.717	1084.303	1091.222	1282.572	1631.613	1437.085	1526.226	1422.953	1973.006	933.019	1378.728

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.220	0.105	0.342	0.315	-0.169	—	—	0.244	—	—	—	—	—

No JSON data available for plots.

Back to Browser