Hg_chrom2_TN10mRNA_3400
Organism: Heterodera glycines Gene Locus: chr2:6725455-6728635 Feature type: polypeptideProtein Sequence
Length: 378
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.923 | 0.677 | 0.866 | 1.368 | 1.102 | 0.746 | 1.26 | 0.794 | 1.587 | 0.858 | 1.122 | 1.401 | 1.249 | 1.018 | 0.756 | 0.831 | 0.867 | 1.162 | 0.814 | 0.622 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3241
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.683
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.222
|
0.253
|
0.087
|
0.545
|
0.232
|
0.248
|
0.099
|
0.082
|
0.331
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006848
|
1.000
|
1.000
|
Hsc_gene_21654.t1
|
Hsc_gene_21654.t1
|
— |
Q17335.1 Alcohol dehydrogenase class-3 [Caenorhabditis elegans]
|
KAI1719381.1 alcohol dehydrogenase groES-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270|GO:0016491
|
GO:0008150_0.806|GO:0003674_0.743|GO:0005575_0.668|GO:0110165_0.657|GO:0003824_0.649|GO:0008152_0.618|GO:0009987_0.544|GO:0016020_0.538|GO:0016491_0.536|GO:0005622_0.514
|
IPR002328+68-82+|IPR011032+3-186_325-373+|IPR013149+205-329+|IPR013154+34-163+|IPR036291+167-339+
|
— |
PF00107+205-329+Zinc-binding_dehydrogenase|PF08240+34-163+Alcohol_dehydrogenase_GroES-like_domain
|
G3DSA:3.40.50.720:FF:000003+182-318+S-(hydroxymethyl)glutathione_dehydrogenase|G3DSA:3.90.180.10:FF:000067+18-181+alcohol_dehydrogenase_1-like_isoform_X1
|
PTHR43880+6-370+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-378
|
1cdo_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
40801.070
|
6.946
|
2.000
|
24.074
|
9.259
|
41.005
|
58.995
|
12.698
|
11.376
|
54.233
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
1988.722
|
2370.308
|
2203.576
|
2028.410
|
3364.173
|
3229.999
|
2353.724
|
1907.804
|
263.503
|
1956.284
|
1230.806
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.336
|
-0.362
|
— |
0.698
|
— |
-0.446
|
-0.868
|
0.447
|
-3.027
|
— | — | — | — |
No JSON data available for plots.