Hg_chrom2_TN10mRNA_3402
Organism: Heterodera glycines Gene Locus: chr2:6737937-6740832 Feature type: polypeptideProtein Sequence
Length: 638
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.82 | 0.875 | 1.254 | 0.216 | 1.254 | 1.085 | 0.522 | 0.235 | 0.766 | 1.377 | 0.926 | 1.936 | 0.914 | 0.995 | 2.111 | 0.94 | 1.053 | 1.021 | 1.447 | 0.461 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3243
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
Gland11|KJ825722.1#tn7jg15920.t1
|
Gland11|KJ8257221#tn7jg15920t1
|
Hsc_gene_21649
|
— |
Hg_chrom2_TN10mRNA_3402
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KRAR,RRAAMMPPRQDPQAIAKRR
|
— | — | — | — | — |
0.914
|
0.372
|
0.000
|
— |
0.283
|
0.308
|
0.034
|
0.672
|
0.099
|
0.159
|
0.105
|
0.047
|
0.287
|
0.280
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006850
|
1.000
|
1.000
|
Hsc_gene_21649.t1
|
Hsc_gene_21649.t1
|
— | — |
AJR19779.1 esophageal gland-localized secretory protein 11 [Heterodera glycines]
|
WP_182392766
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
134-332
|
2.000
|
1-133;333-638
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
73231.710
|
9.884
|
14.500
|
31.348
|
7.210
|
52.351
|
47.649
|
16.928
|
14.420
|
47.649
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
5746.306
|
183.103
|
305.523
|
4691.626
|
3600.271
|
546.540
|
930.382
|
335.342
|
8953.264
|
14452.845
|
12095.882
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
4.543
|
4.049
|
-0.413
|
-2.705
|
0.779
|
-0.821
|
1.619
|
— | — | — | — | — |