Hg_chrom2_TN10mRNA_3403
Organism: Heterodera glycines Gene Locus: chr2:6741208-6752722 Feature type: polypeptideProtein Sequence
Length: 2,141
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 1.314 | 0.713 | 0.354 | 2.086 | 1.15 | 0.606 | 0.701 | 1.297 | 1.363 | 1.663 | 1.841 | 1.739 | 0.386 | 1.325 | 0.734 | 0.582 | 0.538 | 1.437 | 0.495 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3244
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3403
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKEKRKERNRKKNRG,KKLEQKNDGTLKRQKI,RKKNRGEGKGGKRAKD,RKEEEEKEKNQRKERG,KKQKRKEKKERKEKAKEK,KRRDEEEKEEEEEKREKG,RKAESDAAKSFDTERKMIR,RKMIRITVPEWVRDRHERK,KKQKSEAEGMEKKEKRKER,KRKERNRKKNRGEGKGGKR,KRAKDSEEKEEKKERRKEG,KKERRKEGKEEKRKKIRKR,RRKEGKEEKRKKIRKRKRK,RKEGKEEKRKKIRKRKRKK,KRKKIRKRKRKKEGKEEKK,KRKKEGKEEKKGNGEEKRR,RKKEGKEEKKGNGEEKRRD,KKEGKEEKKGNGEEKRRDE,KEKNQRKERGNNEVKKESKEGTKRKAKREKGGKEQKTKGKGKSEEKKEEMREKR
|
— | — | — | — |
1-29
|
0.593
|
0.942
|
0.000
|
0.000
|
0.488
|
0.175
|
0.007
|
0.585
|
0.112
|
0.147
|
0.165
|
0.022
|
0.131
|
0.183
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001140
|
1.000
|
4.000
|
Hsc_gene_21648.t1;Hsc_gene_21648.t2;Hsc_gene_21648.t3;Hsc_gene_21648.t4
|
Hsc_gene_21648.t1;Hsc_gene_21648.t2;Hsc_gene_21648.t3;Hsc_gene_21648.t4
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.768|GO:0110165_0.767|GO:0005622_0.741|GO:0043226_0.707|GO:0016020_0.706|GO:0043229_0.690|GO:0043227_0.622|GO:0008150_0.617|GO:0043231_0.603|GO:0003674_0.535|GO:0009987_0.531
|
IPR007012+1814-1966+|IPR043519+1613-1754_1616-1773+
|
— |
PF04928+1814-1966+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1584-1683+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
87-152;1100-1366;2136-2141
|
3.000
|
1-86;153-1099;1367-2135
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
252325.890
|
8.915
|
37.000
|
35.311
|
11.210
|
54.134
|
45.866
|
18.870
|
16.441
|
35.264
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1985.620
|
249.613
|
923.363
|
702.872
|
234.519
|
140.163
|
147.203
|
175.656
|
6970.798
|
2493.969
|
4412.610
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.656
|
1.356
|
-0.284
|
-1.615
|
-0.728
|
— | — | — | — |
-3.140
|
-3.250
|
— | — |