Hg_chrom2_TN10mRNA_3405
Organism: Heterodera glycines Gene Locus: chr2:6753047-6759527 Feature type: polypeptideProtein Sequence
Length: 1,219
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.515 | 1.717 | 0.641 | 0.566 | 1.627 | 1.052 | 0.508 | 1.025 | 1.44 | 1.474 | 1.628 | 1.689 | 1.982 | 0.489 | 0.737 | 0.797 | 0.753 | 0.584 | 1.262 | 0.844 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3245
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_3405
|
7-Not_Clustered
|
0.720
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
nucleus
|
RRRK,RRRR,KPKKAEKKRM
|
— | — | — | — |
1-19
|
0.997
|
1.000
|
0.000
|
0.000
|
0.694
|
0.208
|
0.009
|
0.597
|
0.180
|
0.142
|
0.152
|
0.019
|
0.092
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003325
|
2.000
|
1.000
|
Hsc_gene_21647.t1
|
Hsc_gene_21646.t1;Hsc_gene_21646.t2;Hsc_gene_21646.t3;Hsc_gene_21647.t1
|
— | — |
KAF7639390.1 PAP_central domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.755|GO:0110165_0.749|GO:0005622_0.695|GO:0016020_0.655|GO:0008150_0.626|GO:0043226_0.626|GO:0043229_0.605|GO:0043227_0.573|GO:0003674_0.542|GO:0043231_0.540|GO:0009987_0.529
|
IPR007012+968-1049+|IPR043519+787-912_802-952+
|
— |
PF04928+968-1049+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+779-1174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1219
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
143041.140
|
8.552
|
25.500
|
29.696
|
13.700
|
51.354
|
48.646
|
16.407
|
13.290
|
37.818
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
736.492
|
73.187
|
213.748
|
177.781
|
31.065
|
19.022
|
14.697
|
42.923
|
2073.524
|
1452.350
|
1718.567
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.315
|
1.143
|
— |
-2.546
|
— | — |
1.073
|
-1.403
|
— |
-3.391
|
-5.335
|
— | — |