Hg_chrom2_TN10mRNA_3406
Organism: Heterodera glycines Gene Locus: chr2:6760120-6760739 Feature type: polypeptideProtein Sequence
Length: 117
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.193 | 0.311 | 3.537 | 1.14 | 1.096 | 0.916 | 1.282 | 0.95 | 1.155 | 1.554 | 2.514 | 0.95 | 0.657 | 0.523 | 0.366 | 0.701 | 0.648 | 1.315 | 1.257 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3246
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3406
|
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KALGKQVRQPKKK
|
— | — | — | — | — |
0.550
|
0.007
|
0.000
|
— |
0.412
|
0.136
|
0.005
|
0.770
|
0.139
|
0.223
|
0.092
|
0.001
|
0.165
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006851
|
1.000
|
1.000
|
Hsc_gene_21645.t1
|
Hsc_gene_21645.t1
|
— | — |
KAF7635902.1 LIM zinc-binding domain-containing protein [Meloidogyne graminicola]
|
No
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.925|GO:0005575_0.918|GO:0110165_0.905|GO:0009987_0.865|GO:0003674_0.846|GO:0005488_0.825|GO:0005622_0.812|GO:0005515_0.792|GO:0043226_0.761|GO:0043229_0.742|GO:0071840_0.727|GO:0016043_0.724|GO:0008092_0.650|GO:0016020_0.623|GO:0005737_0.609|GO:0065007_0.548|GO:0050789_0.534|GO:0006996_0.522|GO:0071944_0.518|GO:0050794_0.512|GO:0007010_0.507|GO:0007015_0.504|GO:0030029_0.504|GO:0030036_0.504|GO:0097435_0.504|GO:0005886_0.502
|
IPR001781+29-97_31-71+
|
— |
PF00412+31-71+LIM_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-117
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
13196.570
|
8.219
|
6.500
|
23.932
|
11.966
|
40.171
|
59.829
|
15.385
|
8.547
|
47.009
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4403.493
|
9589.128
|
13969.664
|
1514.691
|
287.867
|
2115.225
|
120.666
|
20361.559
|
1315.457
|
294.138
|
731.846
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.314
|
-2.800
|
-3.097
|
-2.428
|
2.891
|
-4.119
|
3.167
|
-7.256
|
— | — | — | — | — |