Hg_chrom2_TN10mRNA_3408
Organism: Heterodera glycines Gene Locus: chr2:6763435-6766230 Feature type: polypeptideProtein Sequence
Length: 561
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.891 | 1.202 | 0.713 | 1.905 | 1.07 | 0.777 | 0.997 | 0.713 | 0.594 | 1.06 | 0.783 | 0.524 | 1.535 | 1.44 | 1.637 | 1.095 | 0.994 | 0.513 | 1.508 | 0.524 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3248
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.798
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
extracellular|cell_membrane
|
nucleus
|
KKEQKTEGNWQKQRKEKPK
|
— | — | — | — |
1-30
|
0.847
|
0.999
|
1.000
|
1.000
|
0.136
|
0.084
|
0.016
|
0.229
|
0.099
|
0.051
|
0.207
|
0.055
|
0.583
|
0.649
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003326
|
2.000
|
1.000
|
Hsc_gene_21643.t1
|
Hsc_gene_21643.t1
|
— |
A6MGX9.1 Kunitz-type serine protease inhibitor vestiginin-5 [Demansia vestigiata]
|
KAI1701447.1 EGF-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0008150_0.830|GO:0005575_0.829|GO:0110165_0.829|GO:0009987_0.697|GO:0016020_0.646|GO:0071944_0.644|GO:0065007_0.551|GO:0050789_0.542|GO:0032501_0.533|GO:0003674_0.532|GO:0005886_0.527
|
IPR000742+297-336_300-363_324-335_363-401_366-401_367-399_389-400+|IPR002223+45-106_47-105_59-106_115-175_117-174_128-174+|IPR036880+33-106_46-108_108-183_112-176+|IPR050906+56-401+
|
SM00131+45-106_115-175+|SM00181+300-363_366-401+
|
PF00008+367-399+EGF-like_domain|PF00014+59-106_128-174+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain
|
G3DSA:2.10.25.10:FF:000095+365-402+Notch,_isoform_B
|
PTHR24044+56-401+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
201-297;435-561
|
2.000
|
1-200;298-434
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.951
|
62182.400
|
8.462
|
20.000
|
24.955
|
10.695
|
46.881
|
53.119
|
14.617
|
10.339
|
55.258
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
776.470
|
174.126
|
940.598
|
978.118
|
1204.367
|
1841.210
|
959.767
|
668.728
|
69.580
|
807.279
|
491.122
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.205
|
2.353
|
0.165
|
0.268
|
0.628
|
-0.930
|
-1.565
|
0.664
|
-3.631
|
3.992
|
— | — | — |