SCN Proteipedia

Hg_chrom2_TN10mRNA_3411

Organism: Heterodera glycines Gene Locus: chr2:6770034-6773872 Feature type: polypeptide

Protein Sequence

Length: 577

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.705	1.249	0.725	1.195	0.607	2.044	1.135	1.646	0.77	1.171	0.525	1.733	1.348	1.5	0.92	1.386	0.824	0.762	0.267	0.255	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3250	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_described	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PKPS,KRVLQVWFQNARAKHRRN	—	—	—	—	—	—	0.179	—	—	0.730	0.151	0.010	0.459	0.093	0.058	0.104	0.030	0.124	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003327	2.000	1.000	Hsc_gene_21641.t1	Hsc_gene_21641.t1	—	P50458.2 LIM/homeobox protein Lhx2 [Homo sapiens]	KAI6209655.1 LIM/homeobox protein Lhx9 [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.841\|GO:0032501_0.766\|GO:0032502_0.763\|GO:0048856_0.763\|GO:0009987_0.758\|GO:0007275_0.746\|GO:0048731_0.732\|GO:0065007_0.631\|GO:0050789_0.625\|GO:0050794_0.621\|GO:0005575_0.609\|GO:0007399_0.609\|GO:0003674_0.604\|GO:0110165_0.599\|GO:0005488_0.598\|GO:0030154_0.594\|GO:0048869_0.594\|GO:0008152_0.566\|GO:0019222_0.566\|GO:0048513_0.565\|GO:0031323_0.561\|GO:0044237_0.561\|GO:0043170_0.551\|GO:0060255_0.550\|GO:0005622_0.545\|GO:0009058_0.545\|GO:0009889_0.545\|GO:0031326_0.545\|GO:0044249_0.545\|GO:0009059_0.543\|GO:0010556_0.543\|GO:0010467_0.542\|GO:0010468_0.536\|GO:0022008_0.532\|GO:0043226_0.530\|GO:0044238_0.530\|GO:0080090_0.530\|GO:0097159_0.521\|GO:0043229_0.520\|GO:0003676_0.513\|GO:0006139_0.508\|GO:0016070_0.508\|GO:0032774_0.508\|GO:0034654_0.508\|GO:0090304_0.508\|GO:0141187_0.508\|GO:0019219_0.501\|GO:0051252_0.501	IPR001356+402-462_404-466_405-461_405-463+\|IPR001781+166-228_167-221_168-202_168-225_229-296_230-297+\|IPR009057+391-463+\|IPR017970+437-460+\|IPR022357+298-306+\|IPR050453+164-475+	SM00132+167-221_229-296+\|SM00389+404-466+	PF00046+405-461+Homeodomain\|PF00412+168-225_230-297+LIM_domain	G3DSA:1.10.10.60:FF:000027+399-463+LIM/homeobox_protein_Lhx9	PTHR24208+164-475+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-85;337-577	1.000	86-336	2dmq_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.939	62240.340	7.671	11.500	18.891	9.359	46.967	53.033	11.265	7.626	55.979

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	235.264	135.930	312.480	148.782	46.186	41.708	246.400	138.115	7.709	622.397	358.960

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.971	—	-0.961	-1.724	—	2.573	1.631	0.976	-6.475	—	—	—	—

No JSON data available for plots.

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