Hg_chrom2_TN10mRNA_3413
Organism: Heterodera glycines Gene Locus: chr2:6774263-6776455 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.815 | 1.037 | 0.29 | 1.318 | 0.637 | 1.143 | 0.531 | 0.478 | 1.84 | 1.851 | 0.676 | 1.686 | 2.389 | 0.919 | 1.04 | 0.864 | 0.835 | 0.965 | 0.98 | 0.843 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3251
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— |
RKPKQRAPIAQFVDKFRRI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.060
|
0.136
|
0.061
|
0.116
|
0.328
|
0.583
|
0.462
|
0.124
|
0.546
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006854
|
1.000
|
1.000
|
Hsc_gene_21640.t1
|
Hsc_gene_21640.t1
|
— |
A8XI14.1 Sugar transporter SWEET1 [Caenorhabditis briggsae]
|
KAF8373226.1 swt-3 [Pristionchus pacificus]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0051119
|
GO:0008150_0.924|GO:0009987_0.763|GO:0005575_0.752|GO:0110165_0.750|GO:0016020_0.734|GO:0005886_0.707|GO:0071944_0.707|GO:0006810_0.667|GO:0051179_0.667|GO:0051234_0.667|GO:0055085_0.621|GO:0003674_0.617|GO:0005215_0.533|GO:0022857_0.533
|
IPR004316+61-144_181-265+|IPR047664+67-266+
|
— |
PF03083+61-144_181-265+Sugar_efflux_transporter_for_intercellular_exchange
|
G3DSA:1.20.1280.290:FF:000004+178-267+Sugar_transporter_SWEET
|
PTHR10791+67-266+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
311-314
|
1.000
|
1-310
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
35726.620
|
9.299
|
14.500
|
15.924
|
13.694
|
35.987
|
64.013
|
10.510
|
5.414
|
43.631
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
129.300
|
26.393
|
39.706
|
20.252
|
10.427
|
32.238
|
489.126
|
45.714
|
1.382
|
315.703
|
180.994
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.519
|
-0.865
|
-0.999
|
1.645
|
3.933
|
— |
3.562
|
-8.038
|
4.201
|
-4.795
|
— | — |
No JSON data available for plots.