Hg_chrom2_TN10mRNA_3416
Organism: Heterodera glycines Gene Locus: chr2:6780453-6788030 Feature type: polypeptideProtein Sequence
Length: 1,542
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 1.101 | 0.908 | 0.112 | 2.194 | 1.463 | 0.571 | 0.875 | 1.052 | 1.218 | 1.14 | 1.373 | 0.901 | 0.898 | 1.509 | 1.14 | 0.819 | 0.599 | 0.599 | 0.381 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3254
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KQRKVPRKKRPTKA,RKRENGHLEEEQKRKIKQ,RKESEIKEKLREIQRQNRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.262
|
0.043
|
0.013
|
0.713
|
0.105
|
0.234
|
0.232
|
0.029
|
0.248
|
0.129
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001141
|
1.000
|
4.000
|
Hsc_gene_21637.t1;Hsc_gene_21637.t2;Hsc_gene_21637.t3;Hsc_gene_21637.t4
|
Hsc_gene_21637.t1;Hsc_gene_21637.t2;Hsc_gene_21637.t3;Hsc_gene_21637.t4
|
— |
Q09459.4 Protein fantom [Caenorhabditis elegans]
|
KAI1728586.1 first c2 domain of RPGR-interacting protein 1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.961|GO:0005575_0.952|GO:0110165_0.951|GO:0009987_0.937|GO:0005622_0.926|GO:0016020_0.892|GO:0043226_0.882|GO:0043229_0.860|GO:0043227_0.810|GO:0050896_0.790|GO:0071944_0.784|GO:0005886_0.774|GO:0043228_0.740|GO:0043232_0.740|GO:0032991_0.737|GO:0005856_0.681|GO:0098590_0.660|GO:0042995_0.656|GO:0120025_0.656|GO:0065007_0.653|GO:0071840_0.639|GO:0016043_0.632|GO:0050789_0.632|GO:0051179_0.621|GO:0050794_0.613|GO:0015630_0.611|GO:0005737_0.600|GO:0006810_0.591|GO:0051234_0.591|GO:0030990_0.586|GO:0005929_0.582|GO:0005815_0.581|GO:0051641_0.564|GO:0006996_0.561|GO:0036064_0.546|GO:0035869_0.540|GO:0051716_0.537|GO:0051649_0.530|GO:0044085_0.523|GO:0033036_0.522|GO:0070727_0.522|GO:0007010_0.521|GO:0008104_0.515|GO:0030030_0.515|GO:0046907_0.515|GO:0120036_0.515|GO:0007017_0.512|GO:0016192_0.510|GO:0022607_0.507
|
IPR000008+743-882+|IPR021656+579-691+|IPR031139+1199-1514+|IPR035892+578-686_578-720_751-905_759-905+
|
— |
PF11618+579-691+First_C2_domain_of_RPGR-interacting_protein_1
|
— |
PTHR14240+1199-1514+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-445;921-1368
|
2.000
|
446-920;1369-1542
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.529
|
176164.150
|
5.081
|
-36.500
|
34.825
|
7.069
|
58.236
|
41.764
|
16.667
|
18.158
|
43.061
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
2027.507
|
652.286
|
1042.503
|
401.912
|
99.097
|
59.062
|
104.253
|
286.324
|
237.611
|
7700.096
|
4501.888
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.446
|
-0.836
|
-1.265
|
-2.051
|
-0.732
|
0.829
|
2.174
|
-1.316
|
-5.142
|
— |
-5.745
|
— | — |
No JSON data available for plots.