SCN Proteipedia

Hg_chrom2_TN10mRNA_3417

Organism: Heterodera glycines Gene Locus: chr2:6788317-6797356 Feature type: polypeptide

Protein Sequence

Length: 2,221

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.602	0.722	0.892	0.248	2.431	1.928	0.622	0.653	1.211	0.852	1.426	1.801	0.725	0.528	1.479	1.016	1.129	0.641	0.727	0.424	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3255	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.655

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	PKPS,REPKRRK,KRGTDPQIKTKKEIK,KKMKSRRRRVEEQRKKVE,KRREEKEVSKENEKRRK.,KKREEKQEEERRKRRRNMR,KREEKQEEERRKRRRNMRK,RREDGQRQSEESGGTERKR,KKGAVQERLAIGRRKGKKR,KRGQRIVERVVAIWRGKRD,KKEEKEGKRREEKEVSKENEKRRK	—	—	—	—	—	—	0.000	—	—	0.155	0.166	0.140	0.256	0.217	0.385	0.202	0.021	0.678	0.071

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006856	1.000	1.000	Hsc_gene_21636.t1	—	—	Q19907.2 TWiK family of potassium channels protein 12 [Caenorhabditis elegans]	KAH7676062.1 Protein TWK-11 c, partial [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005267\|GO:0016020\|GO:0071805	GO:0008150_0.971\|GO:0051179_0.898\|GO:0009987_0.896\|GO:0051234_0.893\|GO:0006810_0.886\|GO:0003674_0.777\|GO:0005575_0.760\|GO:0110165_0.758\|GO:0006811_0.739\|GO:0016020_0.735\|GO:0006812_0.721\|GO:0030001_0.721\|GO:0055085_0.716\|GO:0005215_0.710\|GO:0005216_0.710\|GO:0015075_0.710\|GO:0015267_0.710\|GO:0022803_0.710\|GO:0022857_0.710\|GO:0034220_0.710\|GO:0098660_0.686\|GO:0005261_0.685\|GO:0008324_0.685\|GO:0098655_0.685\|GO:0098662_0.661\|GO:0006813_0.659\|GO:0005886_0.650\|GO:0071944_0.650\|GO:0015318_0.634\|GO:0022890_0.631\|GO:0046873_0.631\|GO:0071805_0.622\|GO:0015079_0.599\|GO:0005267_0.597	IPR003280+98-910_191-219_501-510+\|IPR005144+1339-1428+\|IPR013099+179-234_469-541+	—	PF07885+179-234_469-541+Ion_channel	—	PTHR11003+98-910+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-73;641-2040;2172-2221	2.000	74-640;2041-2171	8qz3_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.651	256615.120	5.111	-48.500	37.461	6.303	62.089	37.911	17.965	19.496	40.117

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1317.199	1840.479	1950.241	921.634	288.917	79.656	120.147	202.301	707.177	3206.098	2135.132

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.147	-1.135	-0.972	-1.704	-1.845	0.603	1.240	-0.611	—	—	—	—	—

No JSON data available for plots.

Back to Browser