Hg_chrom2_TN10mRNA_3418
Organism: Heterodera glycines Gene Locus: chr2:6797797-6798664 Feature type: polypeptideProtein Sequence
Length: 191
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.035 | 0.974 | 1.333 | 1.083 | 2.094 | 1.745 | 0.374 | 1.047 | 0.814 | 1.061 | 1.587 | 1.848 | 0.436 | 0.805 | 1.068 | 0.748 | 0.601 | 0.555 | 0.403 | 0.77 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3256
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.826
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.627
|
0.222
|
0.025
|
0.645
|
0.451
|
0.119
|
0.203
|
0.057
|
0.292
|
0.272
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_21635.t1
|
— |
P47773.1 Heat shock cognate 71 kDa protein [Ictalurus punctatus]
|
XP_051523109.1 heat shock cognate 71 kDa protein-like [Myxocyprinus asiaticus]
|
No
|
-0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0140662
|
GO:0008150_0.861|GO:0005575_0.782|GO:0110165_0.772|GO:0009987_0.749|GO:0005622_0.678|GO:0016020_0.595|GO:0003674_0.576|GO:0005488_0.576|GO:0005737_0.563|GO:0043226_0.559|GO:0043229_0.531|GO:0005515_0.528|GO:0065007_0.527|GO:0050896_0.519|GO:0050789_0.516|GO:0071840_0.504|GO:0050794_0.502
|
IPR013126+34-146+|IPR029048+63-147_70-150+|IPR050451+45-160+
|
— |
PF00012+34-146+Hsp70_protein
|
— |
PTHR45639+45-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
43-89;143-191
|
2.000
|
1-42;90-142
|
7kw7_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.777
|
21919.630
|
4.955
|
-6.000
|
37.696
|
6.806
|
57.592
|
42.408
|
17.801
|
19.895
|
43.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey60
|
1267.450
|
1147.911
|
509.165
|
874.371
|
1081.977
|
883.993
|
1738.498
|
988.601
|
1520.748
|
1695.341
|
1620.515
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.403
|
-0.530
|
0.889
|
0.275
|
-0.276
|
0.988
|
— |
0.956
|
— | — | — | — | — |
No JSON data available for plots.