Hg_chrom2_TN10mRNA_3419
Organism: Heterodera glycines Gene Locus: chr2:6805173-6806489 Feature type: polypeptideProtein Sequence
Length: 270
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.034 | 1.292 | 0.808 | 0.894 | 0.617 | 1.14 | 0.926 | 1.481 | 0.988 | 1.351 | 0.505 | 1.307 | 2.16 | 0.783 | 1.058 | 0.847 | 0.85 | 1.291 | 0.0 | 0.871 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3257
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.965
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
29-53
|
0.999
|
— | — |
0.000
|
— | — |
0.281
|
0.401
|
0.005
|
0.719
|
0.223
|
0.084
|
0.186
|
0.006
|
0.034
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006857
|
1.000
|
1.000
|
Hsc_gene_21635.t1
|
Hsc_gene_21635.t1
|
— |
Q05036.1 Heat shock protein 110 [Caenorhabditis elegans]
|
KAI1710670.1 hsp70 protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0140662
|
GO:0005575_0.793|GO:0110165_0.792|GO:0008150_0.726|GO:0005622_0.657|GO:0005737_0.586|GO:0009987_0.566|GO:0003674_0.564|GO:0016020_0.517
|
IPR013126+2-250+|IPR018181+199-212+|IPR043129+3-182_195-250+|IPR050451+2-247+
|
— |
PF00012+2-250+Hsp70_protein
|
G3DSA:3.30.420.40:FF:000171+1-83_107-191+Heat_shock_70_kDa_protein_4
|
PTHR45639+2-247+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-270
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
29756.180
|
7.663
|
5.000
|
19.630
|
13.704
|
40.741
|
59.259
|
11.481
|
8.148
|
52.963
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
538.966
|
716.720
|
373.177
|
525.441
|
590.816
|
526.144
|
863.976
|
480.749
|
45.152
|
795.231
|
473.768
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.171
|
-0.585
|
0.603
|
— | — |
0.725
|
— |
0.987
|
— | — | — | — | — |
No JSON data available for plots.