Hg_chrom2_TN10mRNA_3423
Organism: Heterodera glycines Gene Locus: chr2:6812051-6814777 Feature type: polypeptideProtein Sequence
Length: 522
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.735 | 1.337 | 0.836 | 0.859 | 1.054 | 0.54 | 0.912 | 1.245 | 1.235 | 1.372 | 0.842 | 1.24 | 1.969 | 0.774 | 1.056 | 1.122 | 0.722 | 0.842 | 1.179 | 0.958 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3261
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
extracellular
|
nucleus
|
PNSKRMK
|
— | — | — | — |
1-17
|
0.956
|
0.796
|
1.000
|
1.000
|
0.236
|
0.194
|
0.069
|
0.290
|
0.309
|
0.347
|
0.190
|
0.131
|
0.152
|
0.765
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001844
|
3.000
|
1.000
|
Hsc_gene_21633.t1
|
Hsc_gene_21633.t2
|
— |
P52717.1 Serine carboxypeptidase ctsa-1.1 [Caenorhabditis elegans]
|
KAI1726955.1 serine carboxypeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004185|GO:0006508
|
GO:0005575_0.875|GO:0110165_0.875|GO:0016020_0.760|GO:0043226_0.649|GO:0005622_0.646|GO:0043227_0.611|GO:0043229_0.605|GO:0008150_0.592|GO:0043231_0.583|GO:0005737_0.580|GO:0003674_0.504
|
IPR001563+33-476_40-475_114-126_127-137_162-187_463-476+|IPR018202+176-183+|IPR029058+29-317_36-475+
|
— |
PF00450+40-475+Serine_carboxypeptidase
|
G3DSA:3.40.50.12670:FF:000002+350-485+Carboxypeptidase|G3DSA:3.40.50.1820:FF:000335+30-481+Carboxypeptidase
|
PTHR11802+33-476+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-522
|
4az3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.777
|
58800.270
|
7.236
|
5.500
|
24.138
|
14.368
|
44.253
|
55.747
|
13.218
|
10.920
|
48.659
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
1135.200
|
2.216
|
41.346
|
1762.144
|
1622.953
|
1789.523
|
1308.201
|
333.309
|
231.900
|
2220.191
|
1368.066
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.992
|
9.496
|
5.518
|
-0.151
|
— |
-0.440
|
-2.532
|
2.117
|
— | — | — | — | — |