Hg_chrom2_TN10mRNA_3424
Organism: Heterodera glycines Gene Locus: chr2:6812051-6814777 Feature type: polypeptideProtein Sequence
Length: 482
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.772 | 1.303 | 0.868 | 0.858 | 1.21 | 0.638 | 0.889 | 1.349 | 1.245 | 1.318 | 0.786 | 1.098 | 1.556 | 0.838 | 1.101 | 0.978 | 0.782 | 0.88 | 1.436 | 1.037 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3261
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
PNSKRMK
|
— | — | — | — |
1-17
|
0.956
|
0.796
|
0.000
|
0.000
|
0.181
|
0.181
|
0.096
|
0.302
|
0.278
|
0.441
|
0.145
|
0.081
|
0.129
|
0.737
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001844
|
3.000
|
1.000
|
Hsc_gene_21633.t1
|
Hsc_gene_21633.t2
|
— |
P52717.1 Serine carboxypeptidase ctsa-1.1 [Caenorhabditis elegans]
|
KAI1726955.1 serine carboxypeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004185|GO:0006508
|
GO:0005575_0.844|GO:0110165_0.839|GO:0016020_0.691|GO:0005622_0.640|GO:0043226_0.617|GO:0005737_0.588|GO:0008150_0.581|GO:0043229_0.581|GO:0043227_0.564|GO:0043231_0.543|GO:0003674_0.523
|
IPR001563+33-469_40-478_114-126_127-137_162-187_449-462+|IPR018202+176-183+|IPR029058+29-482_36-479+
|
— |
PF00450+40-478+Serine_carboxypeptidase
|
G3DSA:3.40.50.12670:FF:000002+336-482+Carboxypeptidase|G3DSA:3.40.50.1820:FF:000335+30-482+Carboxypeptidase
|
PTHR11802+33-469+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-482
|
4az3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
54408.950
|
6.438
|
-0.500
|
25.311
|
13.693
|
45.021
|
54.979
|
13.278
|
12.033
|
48.755
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
1135.200
|
2.216
|
41.346
|
1762.144
|
1622.953
|
1789.523
|
1308.201
|
333.309
|
231.900
|
2220.191
|
1368.066
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.992
|
9.496
|
5.518
|
-0.151
|
— |
-0.440
|
-2.532
|
2.117
|
— | — | — | — | — |