Hg_chrom2_TN10mRNA_3425
Organism: Heterodera glycines Gene Locus: chr2:6815171-6817734 Feature type: polypeptideProtein Sequence
Length: 486
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 1.483 | 0.935 | 0.922 | 0.96 | 0.633 | 0.98 | 1.337 | 1.189 | 1.223 | 0.561 | 1.21 | 1.772 | 0.91 | 1.05 | 0.852 | 0.877 | 0.811 | 1.583 | 1.089 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3262
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.753
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-21
|
1.000
|
1.000
|
0.000
|
0.000
|
0.158
|
0.204
|
0.088
|
0.267
|
0.199
|
0.323
|
0.085
|
0.168
|
0.147
|
0.796
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001844
|
3.000
|
1.000
|
Hsc_gene_21633.t1
|
Hsc_gene_21633.t1;Hsc_gene_21633.t2
|
— |
P52717.1 Serine carboxypeptidase ctsa-1.1 [Caenorhabditis elegans]
|
KAI1726955.1 serine carboxypeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004185|GO:0006508
|
GO:0005575_0.798|GO:0110165_0.790|GO:0016020_0.641|GO:0008150_0.577|GO:0005622_0.568|GO:0005737_0.568|GO:0043226_0.545|GO:0003674_0.540|GO:0043227_0.528|GO:0043229_0.508
|
IPR001563+46-473_53-482_127-139_140-150_175-200_453-466+|IPR018202+189-196+|IPR029058+42-486_49-483+|IPR033124+453-470+
|
— |
PF00450+53-482+Serine_carboxypeptidase
|
G3DSA:3.40.50.12670:FF:000002+339-486+Carboxypeptidase|G3DSA:3.40.50.1820:FF:000335+43-485+Carboxypeptidase
|
PTHR11802+46-473+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-486
|
4az3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
54463.770
|
6.050
|
-3.500
|
22.428
|
14.815
|
42.593
|
57.407
|
11.523
|
10.905
|
51.646
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
2052.470
|
10.440
|
1416.812
|
3793.297
|
3105.473
|
3135.077
|
3529.847
|
1522.970
|
525.670
|
2392.585
|
1592.479
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.857
|
8.367
|
1.528
|
-0.321
|
— | — |
-1.146
|
1.355
|
— | — | — | — | — |