Hg_chrom2_TN10mRNA_3426
Organism: Heterodera glycines Gene Locus: chr2:6820014-6826337 Feature type: polypeptideProtein Sequence
Length: 1,392
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.718 | 1.236 | 0.927 | 0.842 | 1.078 | 0.939 | 0.727 | 1.473 | 1.197 | 1.194 | 1.034 | 1.056 | 0.998 | 1.091 | 1.261 | 1.334 | 0.754 | 1.099 | 0.718 | 0.401 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3263
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.755
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.289
|
0.170
|
0.007
|
0.630
|
0.117
|
0.129
|
0.166
|
0.073
|
0.145
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003328
|
1.000
|
2.000
|
Hsc_gene_21632.t1;Hsc_gene_21632.t2
|
Hsc_gene_21632.t1;Hsc_gene_21632.t2
|
— |
Q8VDJ3.1 Vigilin [Mus musculus]
|
KHN71213.1 Vigilin [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.927|GO:0110165_0.923|GO:0016020_0.836|GO:0008150_0.821|GO:0003674_0.738|GO:0071944_0.717|GO:0005886_0.690|GO:0005488_0.681|GO:0008152_0.656|GO:0005515_0.620|GO:0005622_0.606|GO:0097159_0.581|GO:0003676_0.564|GO:0043226_0.551|GO:0003723_0.540|GO:0043229_0.537
|
IPR004087+777-851_858-928_932-1087_1098-1171_1175-1240_1241-1308_1310-1376+|IPR004088+864-912_1244-1305_1312-1372+|IPR036612+859-921_864-952_922-1013_927-1006_1160-1239_1173-1233_1240-1307_1241-1307_1308-1388_1309-1380+
|
SM00322+777-851_858-928_932-1087_1098-1171_1175-1240_1241-1308_1310-1376+
|
PF00013+864-912_1244-1305_1312-1372+KH_domain
|
— |
PTHR10288+1196-1307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
184-269;460-509;666-770
|
4.000
|
1-183;270-459;510-665;771-1392
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
154529.230
|
8.568
|
40.500
|
27.514
|
8.836
|
50.431
|
49.569
|
15.948
|
11.566
|
52.011
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
3997.650
|
4012.037
|
4006.738
|
3062.838
|
3003.316
|
2912.590
|
3298.124
|
4439.528
|
2361.701
|
6442.753
|
4693.731
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.232
|
-0.527
|
-0.279
|
— | — |
0.190
|
0.505
|
-0.287
|
— | — | — | — | — |
No JSON data available for plots.