Hg_chrom2_TN10mRNA_3429
Organism: Heterodera glycines Gene Locus: chr2:6835635-6840001 Feature type: polypeptideProtein Sequence
Length: 546
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.788 | 0.724 | 0.3 | 0.632 | 0.519 | 0.751 | 0.632 | 1.007 | 1.384 | 2.054 | 0.583 | 0.97 | 3.053 | 0.704 | 0.897 | 1.805 | 0.811 | 0.888 | 0.845 | 0.808 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3265
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
KRSR,KMKKREEERRKK
|
11-46
|
0.996
|
43-83
|
0.992
|
— | — |
0.001
|
— | — |
0.156
|
0.078
|
0.023
|
0.228
|
0.309
|
0.480
|
0.381
|
0.013
|
0.352
|
0.250
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001142
|
2.000
|
3.000
|
Hsc_gene_21630.t1;Hsc_gene_21630.t2;Hsc_gene_21630.t3
|
Hsc_gene_21630.t1;Hsc_gene_21630.t2;Hsc_gene_21630.t3
|
— |
Q6DIT7.1 UNC93-like protein MFSD11 [Xenopus tropicalis]
|
XP_024502488.1 UNC93-like protein MFSD11 [Strongyloides ratti];CEF63286.1 UNC93-like protein MFSD11 [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.800|GO:0110165_0.800|GO:0016020_0.791|GO:0005886_0.752|GO:0071944_0.752|GO:0008150_0.708
|
IPR010291+113-528+|IPR036259+77-531_78-525+|IPR051617+79-536+
|
— |
PF05978+113-528+Ion_channel_regulatory_protein_UNC-93
|
— |
PTHR23294+79-536+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
543-546
|
1.000
|
1-542
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.884
|
61171.860
|
9.913
|
24.500
|
15.018
|
16.850
|
38.645
|
61.355
|
10.256
|
4.762
|
45.788
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1014.340
|
1036.873
|
1122.274
|
737.841
|
756.827
|
1337.823
|
850.639
|
1350.912
|
638.769
|
1261.215
|
994.452
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.115
|
-0.628
|
-0.496
|
— |
0.836
|
-0.646
|
— |
-0.527
|
— | — | — | — | — |
No JSON data available for plots.