Hg_chrom2_TN10mRNA_3433
Organism: Heterodera glycines Gene Locus: chr2:6847327-6850386 Feature type: polypeptideProtein Sequence
Length: 540
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.947 | 0.861 | 1.01 | 0.639 | 1.451 | 1.14 | 0.86 | 0.741 | 1.029 | 1.101 | 0.73 | 1.525 | 1.183 | 1.033 | 1.512 | 1.058 | 0.729 | 0.786 | 1.425 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3268
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRKRRQ,KKPTEIGHGKSLRIERK
|
— | — |
64-101
|
0.973
|
— | — |
0.000
|
— | — |
0.967
|
0.053
|
0.009
|
0.201
|
0.026
|
0.037
|
0.023
|
0.009
|
0.015
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006860
|
1.000
|
1.000
|
Hsc_gene_21627.t1
|
Hsc_gene_21627.t1
|
— |
Q8R2T8.2 General transcription factor 3C polypeptide 5 [Mus musculus]
|
KAI1727811.1 RNA polymerase III transcription factor (TF)IIIC subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000127|GO:0006384
|
GO:0008150_0.942|GO:0009987_0.872|GO:0005575_0.661|GO:0110165_0.650|GO:0003674_0.611|GO:0005622_0.588|GO:0008152_0.536|GO:0044238_0.514
|
IPR019136+219-365+|IPR040454+12-528+|IPR041499+26-149+|IPR042536+16-149+
|
— |
PF09734+219-365+RNA_polymerase_III_transcription_factor_(TF)IIIC_subunit_HTH_domain|PF17682+26-149+Tau95_Triple_barrel_domain
|
— |
PTHR13230+12-528+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;460-540
|
1.000
|
19-459
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
60798.630
|
5.350
|
-7.000
|
27.963
|
10.370
|
47.963
|
52.037
|
13.704
|
14.259
|
48.889
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2863.695
|
2128.345
|
1623.207
|
938.817
|
913.259
|
899.801
|
1339.980
|
1296.376
|
9576.834
|
1918.618
|
5200.711
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.621
|
-1.318
|
-0.681
|
— | — |
0.586
|
0.418
|
— |
2.230
|
-3.192
|
— | — | — |
No JSON data available for plots.