Hg_chrom2_TN10mRNA_3434
Organism: Heterodera glycines Gene Locus: chr2:6850592-6853577 Feature type: polypeptideProtein Sequence
Length: 649
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.218 | 1.182 | 0.504 | 0.691 | 0.796 | 1.185 | 0.624 | 1.541 | 1.198 | 1.249 | 0.49 | 1.45 | 2.311 | 0.859 | 1.604 | 1.123 | 0.505 | 0.84 | 1.896 | 0.589 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3269
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.541
|
0.185
|
1.000
|
— |
0.096
|
0.088
|
0.040
|
0.230
|
0.857
|
0.267
|
0.443
|
0.081
|
0.339
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006861
|
1.000
|
1.000
|
Hsc_gene_21626.t1
|
Hsc_gene_21626.t1
|
— |
A0A291PQF1.1 UDP-glycosyltransferase UGT5 [Dactylopius coccus]
|
KAI1721734.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.805|GO:0003674_0.782|GO:0003824_0.650|GO:0009987_0.630|GO:0016740_0.607|GO:0016757_0.582|GO:0005575_0.538|GO:0008152_0.538|GO:0110165_0.538|GO:0008194_0.530|GO:0016758_0.523
|
IPR002213+427-566+|IPR050271+156-627+
|
— |
PF00201+427-566+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+156-627+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-649
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
73961.210
|
10.042
|
33.000
|
21.726
|
15.871
|
42.373
|
57.627
|
14.176
|
7.550
|
46.533
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
41.017
|
26.322
|
68.952
|
39.357
|
29.861
|
41.710
|
65.278
|
63.025
|
6.185
|
49.371
|
30.863
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.161
|
— |
-0.701
|
-0.431
|
0.498
|
0.655
|
0.490
|
— | — | — | — | — | — |