Hg_chrom2_TN10mRNA_3435
Organism: Heterodera glycines Gene Locus: chr2:6853852-6856102 Feature type: polypeptideProtein Sequence
Length: 456
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.249 | 0.918 | 0.678 | 0.832 | 1.462 | 0.956 | 0.809 | 1.974 | 0.975 | 1.245 | 0.764 | 2.58 | 1.401 | 0.633 | 1.343 | 0.752 | 0.755 | 0.631 | 1.181 | 0.709 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3270
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.934
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRLTARHFVEMAQKKDKM
|
27-47
|
0.968
|
— | — | — | — |
0.000
|
— | — |
0.321
|
0.405
|
0.233
|
0.657
|
0.123
|
0.368
|
0.228
|
0.102
|
0.160
|
0.193
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006862
|
1.000
|
1.000
|
Hsc_gene_21625.t1
|
Hsc_gene_13559.t1;Hsc_gene_21625.t1
|
— |
O88070.1 Gamma-glutamylethanolamide synthetase GlnA4 [Streptomyces coelicolor A3(2)]
|
KAF7631151.1 Gln-synt_C domain-containing protein [Meloidogyne graminicola]
|
WP_252912532
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004356|GO:0006542
|
GO:0003674_0.795|GO:0008150_0.765|GO:0009987_0.645|GO:0008152_0.630|GO:0003824_0.621|GO:0044237_0.534
|
IPR008146+116-372_118-451_119-456+|IPR014746+118-454+|IPR036651+2-116_4-112+
|
SM01230+116-372+
|
PF00120+118-451+Glutamine_synthetase,_catalytic_domain
|
— |
PTHR43785+9-451+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-456
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
51535.980
|
6.978
|
5.000
|
28.070
|
12.939
|
45.614
|
54.386
|
15.570
|
12.500
|
44.956
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
854.098
|
473.001
|
981.644
|
497.769
|
865.084
|
2121.494
|
1550.354
|
2414.257
|
56.825
|
355.208
|
227.329
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
— |
-0.872
|
0.765
|
1.309
|
-0.443
|
— |
-0.498
|
— | — | — | — | — |
No JSON data available for plots.