SCN Proteipedia

Hg_chrom2_TN10mRNA_3436

Organism: Heterodera glycines Gene Locus: chr2:6856499-6858991 Feature type: polypeptide

Protein Sequence

Length: 534

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.61	1.002	0.953	0.517	0.78	0.72	0.513	0.843	1.623	1.442	0.596	2.203	1.509	1.188	1.07	1.204	0.89	0.965	1.441	1.652	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3271	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.051	0.043	0.009	0.161	0.249	0.140	0.240	0.010	0.757	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006863	1.000	1.000	Hsc_gene_21624.t1	Hsc_gene_21624.t1	—	Q23022.1 Acetylcholine receptor subunit alpha-type unc-38 [Caenorhabditis elegans]	AUO38747.1 nicotinic acetylcholine receptor alpha subunit 8 [Meloidogyne incognita]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0022848\|GO:0034220\|GO:0045211	GO:0005575_0.932\|GO:0110165_0.932\|GO:0071944_0.895\|GO:0005886_0.873\|GO:0016020_0.873\|GO:0008150_0.863\|GO:0009987_0.828\|GO:0065007_0.762\|GO:0006810_0.747\|GO:0051179_0.747\|GO:0051234_0.747\|GO:0050789_0.708\|GO:0055085_0.708\|GO:0003674_0.689\|GO:0050896_0.676\|GO:0023052_0.674\|GO:0007154_0.671\|GO:0006811_0.665\|GO:0034220_0.665\|GO:0030054_0.621\|GO:0007267_0.613\|GO:0007268_0.609\|GO:0045202_0.609\|GO:0098916_0.609\|GO:0099536_0.609\|GO:0099537_0.609\|GO:0050794_0.599\|GO:0051716_0.596\|GO:0060089_0.591\|GO:0038023_0.590\|GO:0032501_0.589\|GO:0005215_0.587\|GO:0022857_0.587\|GO:0006812_0.559\|GO:0098655_0.559\|GO:0007165_0.556\|GO:0098590_0.555\|GO:0015267_0.548\|GO:0022803_0.548\|GO:0065008_0.548\|GO:0015075_0.541\|GO:0005216_0.537\|GO:0003008_0.530\|GO:0007166_0.507\|GO:0022836_0.504\|GO:0042391_0.502	IPR002394+48-64_82-96_100-112_118-136+\|IPR006029+252-490+\|IPR006201+23-380_61-77_94-105_138-152_238-250+\|IPR006202+14-244+\|IPR018000+138-152+\|IPR036719+244-494+\|IPR036734+6-249_13-243+\|IPR038050+250-361_425-505+	—	PF02931+14-244+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+252-490+Neurotransmitter-gated_ion-channel_transmembrane_region	G3DSA:2.70.170.10:FF:000044+6-249+AcetylCholine_Receptor	PTHR18945+23-380+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-534	8st0_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.682	61380.030	6.583	0.500	20.787	14.607	41.760	58.240	10.861	9.925	47.004

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	grey	386.277	325.510	497.883	208.149	88.564	118.405	74.995	657.668	1.542	949.614	543.298

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.384	-0.782	-1.150	-1.264	0.433	-0.649	2.373	-2.992	-9.201	7.104	—	—	—

No JSON data available for plots.

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