Hg_chrom2_TN10mRNA_3439
Organism: Heterodera glycines Gene Locus: chr2:6864035-6864743 Feature type: polypeptideProtein Sequence
Length: 125
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 0.93 | 0.582 | 2.483 | 0.533 | 0.821 | 0.857 | 1.6 | 0.178 | 1.73 | 1.818 | 1.412 | 0.889 | 0.923 | 0.816 | 1.486 | 0.262 | 0.485 | 3.692 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3274
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
10C01|AF500017.1#tn8jg13562.t1
|
10C01|AF5000171#tn8jg13562t1
|
Hsc_gene_21621
|
— | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
32-53
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.077
|
0.026
|
0.007
|
0.060
|
0.161
|
0.225
|
0.173
|
0.004
|
0.044
|
0.950
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003331
|
2.000
|
1.000
|
Hsc_gene_21621.t1
|
Hsc_gene_21621.t1
|
— | — |
AAO33473.1 gland-specific protein g4e02 [Heterodera glycines]
|
No
|
0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-125
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
14074.490
|
9.879
|
14.000
|
25.600
|
12.800
|
44.800
|
55.200
|
19.200
|
6.400
|
48.800
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
5895.628
|
71.846
|
263.910
|
4589.131
|
2308.543
|
246.785
|
296.221
|
865.703
|
7612.307
|
16843.341
|
12887.184
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.649
|
5.861
|
4.229
|
-1.023
|
-3.211
|
0.275
|
1.701
|
-1.402
|
— | — | — | — | — |
No JSON data available for plots.